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Revision as of 13:50, 11 August 2011 (view source) Toshi (Talk | contribs) ← Older edit		Revision as of 14:06, 11 August 2011 (view source) Toshi (Talk | contribs) Newer edit →
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	# Colony check		# Colony check
	#*All parts successfully transformed		#*All parts successfully transformed
-	# Transfer to LB culture medium	+	# Transfer to LB culture medium:1-9N,1-2M,1-14K,1-12M,1-1D,1-17P,1-1G,1-5A,2-16,2-18H,2-16N,1-3A,3-6H
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	==August 5 (Fri)==		==August 5 (Fri)==
		+	# Restriction digests of 1-9N,1-2M,1-14K,1-12M,1-1D,1-17P,1-1G,1-5A,2-16,2-18H,2-16N,1-3A,3-6H
		+	# Gel electrophoresis
		+	# Transformation of <bbpart>BBa_I13521</bbpart>,
		+	# Ligation
		+	#* 01(K): 1-9N(upstream), 1-12M(downstream), 1-5A(vector)
		+	#* 02(K): 1-1D(upstream), 1-12M(downstream), 1-5A(vector)
		+	#* 03(K): 1-9N(upstream), 3-6H(downstream), 1-5A(vector)
		+	#* 04(K): 1-1D(upstream), 3-6H(downstream), 1-5A(vector)
		+	#* 05(K): 1-1D(upstream), 2-18H(downstream), 1-5A(vector)
		+	#* 06(k): 1-9N(upstream), 2-16L(downstream), 1-5A(vector)
	==August 6 (Sat)==		==August 6 (Sat)==
-	# Transformation of Registry parts (See Table 1).	+	# Transfer to LB culture medium:1-23L
-	Note: 'ID' is an internal identifier used by wet work members to simplify labeling etc. In the case of iGEM distribution parts it usually refers to the plate location.	+	# Transformation of Ligation products
-	{|style="border-collapse: separate; border-spacing: 0; border-width: 1px; border-style: solid; border-color: #000; padding:5px;" cellpadding="5"	+	# Preparation of LB plates (33 Amp, 14 Kan)
-	|+Table 1	+
-	!ID!!Part Name!!Resistance!!Description	+
-	|-	+
-	|2-20J||<bbpart>BBa_K118023</bbpart>||A||''C. fermi'' endocellulase Cen A coding	+
-	|-	+
-	|2-20H||<bbpart>BBa_K118022</bbpart>||A||''C. fermi'' exocellulase Cex coding	+
-	|-	+
-	|1-2M||<bbpart>BBa_B0034</bbpart>||A||RBS	+
-	|-	+
-	|1-13D||<bbpart>BBa_B0010</bbpart>||A||terminator	+
-	|-	+
-	|1-1D||<bbpart>BBa_R0010</bbpart>||A||promoter	+
-	|-	+
-	|1-18F||<bbpart>BBa_E1010</bbpart>||K||RFP coding	+
-	|}	+
-		+
	[[Team:Osaka/Notebook|Back to Notebook]]		[[Team:Osaka/Notebook|Back to Notebook]]

---

Revision as of 14:06, 11 August 2011

Contents 1 August 1 (Mon) 2 August 2 (Tue) 3 August 3 (Wed) 4 August 4 (Thu) 5 August 5 (Fri) 6 August 6 (Sat)

August 1 (Mon)

1. Preparation of LB agar plates (33 Amp, 18 Kan, 17 Cam).

August 2 (Tue)

1. Culture medium preparation
2. Competent cells preparation - Nojima Method
   • SOB medium (MgCl2 not yet added) -> stored at 4˚C
   • Preparation of glucose solution for making SOC medium.
   • Single-colony streaking of E. coli (strain DH5α) on 2 LB agar plates -> 37˚C incubation o/n

Tomorrow we shall prepare the remainder of the reagents and inoculate SOB with o/n-incubated E. coli.

1. Transformation of Registry parts (See Table 1).

Note: 'ID' is an internal identifier used by wet work members to simplify labeling etc. In the case of iGEM distribution parts it usually refers to the plate location.

Table 1

ID	Part Name	Resistance	Description
1-9N	<bbpart>BBa_K118023</bbpart>	A	RecA promoter
1-2M	<bbpart>BBa_K118022</bbpart>	A	RBS
1-14K	<bbpart>BBa_B0034</bbpart>	A	GFP(wild type)
1-12M	<bbpart>BBa_B0010</bbpart>	A	RBS+GFP+double terminator
1-1D	<bbpart>BBa_R0010</bbpart>	A	promoter(lacI regulation)
3-6H	<bbpart>BBa_E1010</bbpart>	A	CrtE I B with RBS
2-18H	<bbpart>BBa_E1010</bbpart>	A	RBS+CrtE
2-16N	<bbpart>BBa_E1010</bbpart>	A	RBS+CrtB
2-18H	<bbpart>BBa_E1010</bbpart>	A	RBS+CrtI
1-17P	<bbpart>BBa_E1010</bbpart>	A	RBS+CrtY
1-1G	<bbpart>BBa_E1010</bbpart>	A	construction plasmid containing mRFP coding device
1-3A	<bbpart>BBa_E1010</bbpart>	C	construction plasmid containing mRFP coding device
1-5A	<bbpart>BBa_E1010</bbpart>	K	construction plasmid containing mRFP coding device

August 3 (Wed)

1. Competent cells preparation (continued)
   • Inoculation of pre-culture SOB from o/n-incubated agar plate colonies.
   • Transfer from pre-culture to growth culture.
2. Colony check
   • All parts successfully transformed
3. Transfer to LB culture medium:1-9N,1-2M,1-14K,1-12M,1-1D,1-17P,1-1G,1-5A,2-16,2-18H,2-16N,1-3A,3-6H

August 4 (Thu)

1. OD measurements throughout the day till required OD (0.3~0.7) was obtained.
2. Completion of competent cells according to protocol.
3. Miniprep of 1-9N,1-2M,1-14K,1-12M,1-1D,1-17P,1-1G,1-5A,2-16,2-18H,2-16N,1-3A,3-6H

August 5 (Fri)

1. Restriction digests of 1-9N,1-2M,1-14K,1-12M,1-1D,1-17P,1-1G,1-5A,2-16,2-18H,2-16N,1-3A,3-6H
2. Gel electrophoresis
3. Transformation of <bbpart>BBa_I13521</bbpart>,
4. Ligation
   • 01(K): 1-9N(upstream), 1-12M(downstream), 1-5A(vector)
   • 02(K): 1-1D(upstream), 1-12M(downstream), 1-5A(vector)
   • 03(K): 1-9N(upstream), 3-6H(downstream), 1-5A(vector)
   • 04(K): 1-1D(upstream), 3-6H(downstream), 1-5A(vector)
   • 05(K): 1-1D(upstream), 2-18H(downstream), 1-5A(vector)
   • 06(k): 1-9N(upstream), 2-16L(downstream), 1-5A(vector)

August 6 (Sat)

1. Transfer to LB culture medium:1-23L
2. Transformation of Ligation products
3. Preparation of LB plates (33 Amp, 14 Kan)

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