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Team:Freiburg/Notebook/1 August
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==<span style="color:blue;">blue light receptor</span>== | ==<span style="color:blue;">blue light receptor</span>== | ||
| - | === | + | ===PCR=== |
| - | '''Investigators: | + | '''Investigators: Sophie''' |
'''PCR''' | '''PCR''' | ||
As our last PCRs of the LovTAP with the Gibson overhangs didn't work well, we now try a PCR with primers without overhangs for Gibson assembly. | As our last PCRs of the LovTAP with the Gibson overhangs didn't work well, we now try a PCR with primers without overhangs for Gibson assembly. | ||
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'''To confirm the PCR-Product has the correct size, load 2 µl of the sample onto an agarose-gel.''' | '''To confirm the PCR-Product has the correct size, load 2 µl of the sample onto an agarose-gel.''' | ||
| + | [[File:Freiburg_2011_08_01.jpg]] | ||
'''How did you label the PCR-Product, where is it stored and what do you do next? ''' | '''How did you label the PCR-Product, where is it stored and what do you do next? ''' | ||
Revision as of 12:48, 2 August 2011
Contact 
Contents |
green light receptor
Qickchange PCR of CcaS
Investigators:Julia
repeating experiment from___, because we had no positive transformation, probably chosen wrong annealing temperature before.
blue light receptor
PCR
Investigators: Sophie PCR As our last PCRs of the LovTAP with the Gibson overhangs didn't work well, we now try a PCR with primers without overhangs for Gibson assembly.
| Name: Sophie
| Date: 01.08.11 |
| Continue from Experiment: PCR (Date): 27.07.11
(Name): Sandra, Sophie | |
| Project Name: Blue Light | |
PCR-Mixture for one Reaction:
For a 50 µl reaction use
| 32,5µl | H20 | Name |
| 10µl | 5x Phusion Buffer | of Primer |
| 2.5µl | Primer fw | P35 |
| 2.5µl | Primer dw | P36 |
| 1µl | dNTPs | of Template DNA |
| 1µl | DNA-Template | M35 (LovTAP) |
| 0.5 µl | Phusion (add in the end) |
What program do you use?
LovTAP ohne Ueberhaenge
To confirm the PCR-Product has the correct size, load 2 µl of the sample onto an agarose-gel.
How did you label the PCR-Product, where is it stored and what do you do next?
Labelled: M35 short; stored in Gibson Stuff box.
red light receptor
3A-assembly with pcyA and the terminator BBa_1006
Investigators:Julia
1.Digestion:
terminator (S21a), 26µl of the miniprep+ 12,1 µl H2O, cut with XbaI&PstI
pcyA (part BBa_I15009), 3 µl of miniprep + 35µl H2O, cut with EcoRI&SpeI
Vector-backbone (10 µl) pSB1T3, cut with EcoRI,PstI & DpnI
to each reation 5µl BSA(10x) and 5µl NEB buffer4 were added, digested at 37°C for two hours, inactivated at 80°C for 20min.
2.Ligation
2µl of digested pcyA,terminator and vector were added to 11µl H2O,2µl ligase buffer and 1µl T4 ligase.
Incubated at room temperature for 35 min, inactivated at 80°C for 20 min.
3.Transformation
Lysis cassette
NAME OF YOUR EXPERIMENT
Investigators:NAME
Precipitator
PCR
| Name: Sophie
| Date: 01.08.11 |
| Continue from Experiment: replay of PCR 19.07.11 (Date) 19.07.11
(Name) Ruediger | |
| Project Name: GFP Pbd | |
PCR-Mixture for one Reaction:
For a 50 µl reaction use
| 32,5µl | H20 | Name |
| 10µl | 5x Phusion Buffer | of Primer |
| 2.5µl | Primer fw | P28 |
| 2.5µl | Primer dw | P18 / P19/ P20 |
| 1µl | dNTPs | of Template DNA |
| 1µl | DNA-Template | S 14 (GFP) |
| 0.5 µl | Phusion (add in the end) |
What program do you use?
Ruediger PCR (modified by Tobi and me. First 10 cycles with 55°C, next cycles with 62°C annealing temperature.
To confirm the PCR-Product has the correct size, load 2 µl of the sample onto an agarose-gel.
How did you label the PCR-Product, where is it stored and what do you do next?
