Team:Lyon-INSA-ENS/Realisation/Protocols/Ozyme

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<p style="text-align : center"> <font color="green" size="5"> CaCl2 chemical transformation </font> </p>
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<p style="text-align : center"> <font color="green" size="5"> Ozyme digestion </font> </p>
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This protocol aims at inserting plasmids notably into NM522 strains, or any other E.Coli strain
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This protocol aims at cutting plasmids on specific restriction sites using restriction enzymes.
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It has been found less efficient than the TSS transformation protocol, thus we do not recommend using it.
 
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<b>1.</b> Monitor the OD600 of a 50mL culture of NM522 cells in LB medium at 37°C. Proceed to the next step when it reaches 0.2-0.4 ( not higher than 0.6 ), which takes approximately 4 hours.
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<b>1.</b> In an eppendorf tube, add the following solutions in any order :<br/>
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-11µL water<br/>
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-10µL DNA<br/>
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-2.5µL NE Buffer 2<br/>
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-0.5µL BSA X50<br/>
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<b>2.</b> Aliquot the culture into fractions of the desired volume V ( 10 or 15 mL usually ).
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<b>2.</b> Add 0.5µL of the desired enzymes.
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<b>3.</b> Incubate on ice for 10mn
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<b>3.</b> Incubate at 37°C for 10mn
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<b>4.</b> Centrifuge at 4°C, 10mn, 5000rpm
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<b>4.</b> Inactivate the enzymes by a 20mn incubation at 80°C
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<b>5.</b> Empty the supernatant
 
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<b>6.</b> Add V/2 mL cold and sterile CaCl2 100mM
 
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<b>7.</b> Incubate for 20mn on ice
 
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<b>8.</b> Centrifuge at 4°C, 5mn, 5000rpm
 
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<b>9.</b> Empty the supernatant and resuspend ( do not vortex ) in V/15 mL CaCl2 and V/30 mL glycerol 40%
 
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<b>10.</b> Aliquot the bacteria in 200 µL fractions and keep on ice. These bacteria should be used within the day.
 
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<b>11.</b> Add the desired quantity of DNA to the fractions. For positive control, we used Puc18 plasmid. For negative control, we used water.
 
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<b>12.</b> Incubate for 30mn on ice
 
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<b>13.</b> Heat shock at 42°C for 2mn
 
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<b>14.</b> Incubate for 5mn on ice
 
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<b>15.</b> Add 800µL of LB medium and incubate for 1h at 37°C
 
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<b>16.Optional</b> Concentrate 10X by centrifuging for 2mn at 11000 rpm, eliminate the supernatant and resuspend in 100µL LB.
 
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<b>17.</b> Plate 100µL of bacteria on LB medium with the appropriate antibiotic resistance and incubate at 37°C.
 
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Revision as of 12:28, 28 July 2011





Ozyme digestion





This protocol aims at cutting plasmids on specific restriction sites using restriction enzymes.





Procedure



1. In an eppendorf tube, add the following solutions in any order :
-11µL water
-10µL DNA
-2.5µL NE Buffer 2
-0.5µL BSA X50


2. Add 0.5µL of the desired enzymes.


3. Incubate at 37°C for 10mn


4. Inactivate the enzymes by a 20mn incubation at 80°C








ENS assystem Biomérieux INSA INSA
Retrieved from "http://2011.igem.org/Team:Lyon-INSA-ENS/Realisation/Protocols/Ozyme"