Team:Caltech/Week 6

From 2011.igem.org

(Difference between revisions)
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==July 18==
==July 18==
-
Run colony PCR of positive Gibson plates from Friday<br>
+
Colony PCR of positive Gibson plates from Friday<br/>
-
Run gel of short PCR parts to confirm they are being amplified<br>
+
Gel of short PCR parts to confirm they are being amplified<br/>
-
Run pulsed field gel with a larger amount of soil sample DNA<br>
+
Pulsed field gel with a larger amount of soil sample DNA<br/>
-
Retransform pSB3K5 into Xl-10s<br>
+
Retransform pSB3K5 into Xl-10s<br/>
===Results===
===Results===
==July 19==
==July 19==
PCR parts for Gibson assembly of pNT001, pNT003 and Joe's positive GFP control<br>
PCR parts for Gibson assembly of pNT001, pNT003 and Joe's positive GFP control<br>
===Results===
===Results===
-
pSB3K5 plate had 0 colonies.<br>
+
pSB3K5 plate had 0 colonies.<br/>
 +
PFGE of soil-extracted DNA shows a smear; will do gel extraction of ~40kbp sequences for fosmid kit.
Gibson PCR concentrations
Gibson PCR concentrations

Revision as of 18:59, 20 July 2011


Caltech iGEM 2011



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July 18

Colony PCR of positive Gibson plates from Friday
Gel of short PCR parts to confirm they are being amplified
Pulsed field gel with a larger amount of soil sample DNA
Retransform pSB3K5 into Xl-10s

Results

July 19

PCR parts for Gibson assembly of pNT001, pNT003 and Joe's positive GFP control

Results

pSB3K5 plate had 0 colonies.
PFGE of soil-extracted DNA shows a smear; will do gel extraction of ~40kbp sequences for fosmid kit.

Gibson PCR concentrations

Part Concentration (ng/ul)
R0010 for pNT001 86.4
B0014 for pNT001 128.3
B0014 for pNT003 89.1
promoter for GFP Gibson positive control 51.9
GFP for positive control 130.4
terminator for positive control 82.5


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