Team:IIT Madras/Dry lab/Circuitry
From 2011.igem.org
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<div id="write_up" style="text-decoration:none; width:90%;"> | <div id="write_up" style="text-decoration:none; width:90%;"> | ||
<br/><br/><br/><br/><br/><br/><br/> | <br/><br/><br/><br/><br/><br/><br/> | ||
- | <img src="https://static.igem.org/mediawiki/2011/b/b1/2162309526_9869d37c77.jpg" width=" | + | <img src="https://static.igem.org/mediawiki/2011/b/b1/2162309526_9869d37c77.jpg" width="140" height="140"ALIGN="LEFT" style="position:relative;left:100px";/> |
- | <img src="https://static.igem.org/mediawiki/2011/b/bc/Green_Lantern_Rebirth_1_coverart_%281%29.jpg" width=" | + | <p align="right"><img src="https://static.igem.org/mediawiki/2011/b/bc/Green_Lantern_Rebirth_1_coverart_%281%29.jpg" width="140" height="140" ALIGN="RIGHT" style="position:relative;left:-100px";/></p><br/><br/><br/><br/><br/><br/> |
- | < | + | <h1 style="text-align:center;"><font color="#008000"><b><u>Green Lantern</u></b></font></h1> |
- | <p | + | <p> |
- | <font | + | <font color="#080000"> One of the challenging task was to establish the lighting setup which would power the proteorhodopsin in presence of retinal to carry its H+ pumping activity in the carbon deficient condition. On rigorous searching we came across a research paper (reference and relevant extract mentioned below) which clearly defined the wavelenght and intensity to maintain the proton motive force (pmf).<br/> |
- | <b> | + | <b>Reference : Light-powering Escherichia coli with proteorhodopsin Jessica M. Walter, Derek Greenfield, Carlos Bustamante, and Jan Liphardt . Contributed by Carlos Bustamante, December 13, 2006 </b><br/><br/> |
Prior to this paper the role of light in powering cells containing proteorhodopsin and participation in ocean energy fluxes remained largely unclear. This paper makes an attempt to show that when cellular respiration is inhibited by depleting oxygen or by the respiratory poison azide, Escherichia coli cells expressing PR become light-powered. | Prior to this paper the role of light in powering cells containing proteorhodopsin and participation in ocean energy fluxes remained largely unclear. This paper makes an attempt to show that when cellular respiration is inhibited by depleting oxygen or by the respiratory poison azide, Escherichia coli cells expressing PR become light-powered. | ||
- | + | <br/> | |
- | <h3><font | + | <h3><font color="#980000 "><b><u>Instrumentation</u></b></font></h3> |
- | Power density values for | + | Power density values for <b>green light</b> refer to the power density passed by a D540/25ϫ filter originating at a 175 W Xenon bulb .The sample chamber was periodically illuminated with bright green light (160mW/cm2) coinciding with the maximum of PR’s absorption spectrum, 525 nm. At 525 nm the sample was observed to show maximum absorption (fig.1).<br/> |
Based on the above fact from the above given reference we decided to use green LED of dominant wavelenght of 525 nm. | Based on the above fact from the above given reference we decided to use green LED of dominant wavelenght of 525 nm. | ||
<br/><br/> | <br/><br/> | ||
- | <h3><font | + | <h3><font color="#980000 "><b><u>Diagrams</u></b></font></h3> |
<img src="https://static.igem.org/mediawiki/2011/8/87/H11.png" width="340" height="250"/> | <img src="https://static.igem.org/mediawiki/2011/8/87/H11.png" width="340" height="250"/> | ||
<img src="https://static.igem.org/mediawiki/2011/4/4f/H12.png" width="340" height="250"/> | <img src="https://static.igem.org/mediawiki/2011/4/4f/H12.png" width="340" height="250"/> | ||
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<font size=2><u><b>fig(1)</b> & <b>fig(2)</b> Copyright@Light-powering Escherichia coli with proteorhodopsin Jessica M. Walter, Derek Greenfield, Carlos Bustamante, and Jan Liphardt. Contributed by Carlos Bustamante, December 13, 2006 </u></font> | <font size=2><u><b>fig(1)</b> & <b>fig(2)</b> Copyright@Light-powering Escherichia coli with proteorhodopsin Jessica M. Walter, Derek Greenfield, Carlos Bustamante, and Jan Liphardt. Contributed by Carlos Bustamante, December 13, 2006 </u></font> | ||
<br/><br/> | <br/><br/> | ||
- | <h3><font | + | <h3><font color="#980000 "><b><u>Specifications</u></b></font></h3> |
<ol> | <ol> | ||
- | <li | + | <li><b>LM78M05</b> – 3 terminal positive voltage regulator</li> |
- | <li>LED of wavelength - | + | <li>LED of wavelength -<b>525 nm</b>( colour- parrot green)</li> |
- | <li | + | <li><b>9 V</b> battery</li> |
<li>100 ohms/51 ohms/ 33 ohms/ 18 ohms resistor</li> | <li>100 ohms/51 ohms/ 33 ohms/ 18 ohms resistor</li> | ||
</ol><br/> | </ol><br/> | ||
- | <h3><font | + | <h3><font color="#980000 "><b><u>LED:</u></b></font></h3> |
- | <p>OVLFx3C7 Series (green): | + | <p>OVLFx3C7 Series (green): <b>OVLFG3C7</b><b>(fig.3)</b><br/></p> |
<ol> | <ol> | ||
<li>Characteristics<br/> | <li>Characteristics<br/> | ||
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<li>Round Through-Hole LED Lamp(5 mm)</li> | <li>Round Through-Hole LED Lamp(5 mm)</li> | ||
</ul> | </ul> | ||
- | <li>Material - | + | <li>Material - <b>InGaN</b></li> |
- | <li>Typical Intensity - | + | <li>Typical Intensity - <b>5200 mcd (millicandela)</b></li> |
- | <li>Lens colour - | + | <li>Lens colour - <b>water clear</b></li> |
- | <li>Operating Voltage - | + | <li>Operating Voltage - <b>(-40 to 85) degree C</b></li> |
- | <li>Continous forward current - | + | <li>Continous forward current - <b>20mA</b></li> |
- | <li>Peak Wavelength - | + | <li>Peak Wavelength - <b>521 nm</b></li> |
- | <li>Dominant Wavelength - | + | <li>Dominant Wavelength - <b>525 nm</b></li> |
- | <li>Spectra Half-Width - | + | <li>Spectra Half-Width - <b>25 nm</b></li><br/> |
- | <h3><font | + | <h3><font color="#980000 "><b><u>Circuit Diagram of the Setup</u></b></font></h3><br/> |
<img src="https://static.igem.org/mediawiki/2011/1/11/H15.png" width="450" height="200"/> | <img src="https://static.igem.org/mediawiki/2011/1/11/H15.png" width="450" height="200"/> | ||
- | <h3><font | + | <h3><font color="#980000 "><b><u>Observation</u></b></font></h3><br/> |
<table border="1"> | <table border="1"> | ||
<tr> | <tr> | ||
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</tr> | </tr> | ||
</table><br/> | </table><br/> | ||
- | <h3><font | + | <h3><font color="#980000 "><b><u>Calculation</u></b></font></h3><br/> |
<ul> | <ul> | ||
- | <li>LED equivalent efficiency - | + | <li>LED equivalent efficiency - <b>40 lumen/W</b></li> |
- | <li>Luminous Intensity - | + | <li>Luminous Intensity - <b>5.2 cd = 65.52 lumens</b></li> |
- | <li>Power given (excluding heat) by 1 LED - | + | <li>Power given (excluding heat) by 1 LED - <b>1.638 W</b></li> |
- | <li>Power by 140 LEDs - | + | <li>Power by 140 LEDs -<b>229.32 W</b></li> |
- | <li>Luminous Intensity - | + | <li>Luminous Intensity -<b>81.105359 mW/cm2</b></li> |
- | <li>Internal Resistance of LED - | + | <li>Internal Resistance of LED - <b>3.4 V/ 20 mA = 170 ohms</b></li> |
</ul><br/> | </ul><br/> | ||
Assuming average current across the LED to be 30 mA. This gives an Luminous Efficiency to be 135% <b>(fig.4)</b>. | Assuming average current across the LED to be 30 mA. This gives an Luminous Efficiency to be 135% <b>(fig.4)</b>. | ||
- | So the luminous Intensity of the entire lighting setup = | + | So the luminous Intensity of the entire lighting setup = <b>109.4922 mW/cm2</b> |
- | The 140 LEDs were fixed in 3 breadboards . The luminous intensity calculated above is a cumulative effect of all The LED's. So depending upon how many breadboards we use, we can choose to establish a luminous intensity of | + | The 140 LEDs were fixed in 3 breadboards . The luminous intensity calculated above is a cumulative effect of all The LED's. So depending upon how many breadboards we use, we can choose to establish a luminous intensity of <b>37 mW/cm2, 74 mW/cm2</b> and <b>109.4922 mW/cm2</b>. |
- | The distance of the lighting source from the flask containing Proteorhodopsin and Retinal was strictly maintained at | + | The distance of the lighting source from the flask containing Proteorhodopsin and Retinal was strictly maintained at <b>15cm</b>.<br/> |
</font> | </font> | ||
</p></div> | </p></div> |
Latest revision as of 00:48, 29 October 2011
Green Lantern
One of the challenging task was to establish the lighting setup which would power the proteorhodopsin in presence of retinal to carry its H+ pumping activity in the carbon deficient condition. On rigorous searching we came across a research paper (reference and relevant extract mentioned below) which clearly defined the wavelenght and intensity to maintain the proton motive force (pmf). OVLFx3C7 Series (green): OVLFG3C7(fig.3)
Reference : Light-powering Escherichia coli with proteorhodopsin Jessica M. Walter, Derek Greenfield, Carlos Bustamante, and Jan Liphardt . Contributed by Carlos Bustamante, December 13, 2006
Prior to this paper the role of light in powering cells containing proteorhodopsin and participation in ocean energy fluxes remained largely unclear. This paper makes an attempt to show that when cellular respiration is inhibited by depleting oxygen or by the respiratory poison azide, Escherichia coli cells expressing PR become light-powered.
Instrumentation
Power density values for green light refer to the power density passed by a D540/25ϫ filter originating at a 175 W Xenon bulb .The sample chamber was periodically illuminated with bright green light (160mW/cm2) coinciding with the maximum of PR’s absorption spectrum, 525 nm. At 525 nm the sample was observed to show maximum absorption (fig.1).
Based on the above fact from the above given reference we decided to use green LED of dominant wavelenght of 525 nm.
Diagrams
fig(1) & fig(2) Copyright@Light-powering Escherichia coli with proteorhodopsin Jessica M. Walter, Derek Greenfield, Carlos Bustamante, and Jan Liphardt. Contributed by Carlos Bustamante, December 13, 2006
Specifications
LED:
Circuit Diagram of the Setup
Observation
Reading 1
Reading 2
Reading 3
Reading 4
Vss (V)
5.56
5.56
5.56
5.56
Vr(V)
0.5
1.0
0.33
0.66
V led(V)
5.06
4.56
5.23
4.9
I led(mA)
29.7
26.8
30.7
28.8
Calculation
Assuming average current across the LED to be 30 mA. This gives an Luminous Efficiency to be 135% (fig.4).
So the luminous Intensity of the entire lighting setup = 109.4922 mW/cm2
The 140 LEDs were fixed in 3 breadboards . The luminous intensity calculated above is a cumulative effect of all The LED's. So depending upon how many breadboards we use, we can choose to establish a luminous intensity of 37 mW/cm2, 74 mW/cm2 and 109.4922 mW/cm2.
The distance of the lighting source from the flask containing Proteorhodopsin and Retinal was strictly maintained at 15cm.