Team:Tokyo Tech

From 2011.igem.org

(Difference between revisions)
 
(60 intermediate revisions not shown)
Line 2: Line 2:
<html lang="english" xmlns="http://www.w3.org/1999/xhtml" xml:lang="english">
<html lang="english" xmlns="http://www.w3.org/1999/xhtml" xml:lang="english">
<head>
<head>
-
<title>Tokyo Tech 2011</title>
 
<meta http-equiv="content-script-type" content="text/javascript" />
<meta http-equiv="content-script-type" content="text/javascript" />
<meta http-equiv="content-type" content="text/html; charset=Shift_JIS" />
<meta http-equiv="content-type" content="text/html; charset=Shift_JIS" />
Line 77: Line 76:
background-color: #EFEBEC;
background-color: #EFEBEC;
color: #000000;
color: #000000;
-
font-size: 14px;
+
font-size: 13px;
}
}
Line 85: Line 84:
left: 0;
left: 0;
clear: both;
clear: both;
-
height: 180px;
+
height: 190px;
-
width: 752px;
+
width: 945px;
}
}
.main
.main
Line 98: Line 97:
{
{
position: static;
position: static;
-
top: 300px;
+
top: 310px;
margin: 5px 5px 5px 5px;
margin: 5px 5px 5px 5px;
padding: 0 0 0 0;
padding: 0 0 0 0;
Line 145: Line 144:
float: right;
float: right;
}
}
-
 
+
-
        img.center
+
object
{
{
-
float: center;
+
float: none;
-
}
+
}
-->
-->
Line 191: Line 190:
}
}
-
window.onload = function() {
+
function getElementsByClass() {
 +
    var classElements = new Array();
 +
    var allElements = document.getElementsByTagName("*");
 +
    for (i = 0 ; i < allElements.length; i++) {
 +
if (allElements[i].className == 'firstHeading') {
 +
    allElements[i].style.display = 'none';
 +
  // window.alert('発見。');
 +
}
 +
    }
 +
}
 +
 +
window.onload = function() {
 +
getElementsByClass();
var menu = window.document.getElementById('TopMenu');
var menu = window.document.getElementById('TopMenu');
if(menu==null)
if(menu==null)
Line 224: Line 235:
<!-- top box -->
<!-- top box -->
<div class="top">
<div class="top">
-
<OBJECT classid="clsid:D27CDB6E-AE6D-11cf-96B8-444553540000" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,0,0" WIDTH="965" HEIGHT="150" id="Yourfilename" ALIGN="">
+
<object classid="clsid:D27CDB6E-AE6D-11cf-96B8-444553540000" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,0,0" width="965" height="150" id="Yourfilename" align="" style="float:none;">
-
<PARAM NAME=movie VALUE="https://static.igem.org/mediawiki/2011/4/4d/Header.swf"> <PARAM NAME=quality VALUE=high> <PARAM NAME=bgcolor VALUE=#FFFFFF> <EMBED src="https://static.igem.org/mediawiki/2011/4/4d/Header.swf" quality=high bgcolor=#FFFFFF WIDTH="965" HEIGHT="150" NAME="Yourfilename" ALIGN="" TYPE="application/x-shockwave-flash" PLUGINSPAGE="http://www.macromedia.com/go/getflashplayer"></EMBED> </OBJECT>  
+
<param name="movie" value="https://static.igem.org/mediawiki/2011/4/4d/Header.swf">
 +
<param name="quality" value="high">
 +
<param name="bgcolor" value="#FFFFFF">
 +
<embed src="https://static.igem.org/mediawiki/2011/4/4d/Header.swf" quality="high" bgcolor="#FFFFFF" width="965" height="150" name="Yourfilename" align="" type="application/x-shockwave-flash" pluginspage="http://www.macromedia.com/go/getflashplayer">
 +
</embed>
 +
</object>
<!-- list of top menu -->
<!-- list of top menu -->
<div id="navigation">
<div id="navigation">
Line 256: Line 272:
<li id="menu_Extra">
<li id="menu_Extra">
More
More
-
<ul>
+
<ul style="width:210px;">
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Safety">Safety</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Safety">Safety</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Attribution_and_Contributions.htm">Attribution and Contributions</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Attribution_and_Contributions.htm">Attribution and Contributions</a></li>
Line 275: Line 291:
<!-- left menu list -->
<!-- left menu list -->
-
<div style="min-height:2200px; float: left">
+
<div style="min-height:2550px; float: left">
-
<div id="LeftMenu" style="top:50px;">
+
<div id="LeftMenu" style="top:70px;">
<!--list of page menu: DO NOT WRITE LINKS NOT WRITTEN IN THIS PAGE -->
<!--list of page menu: DO NOT WRITE LINKS NOT WRITTEN IN THIS PAGE -->
<ul>
<ul>
Line 283: Line 299:
<li><a href="#rain"> Make it rain</a></li>
<li><a href="#rain"> Make it rain</a></li>
<li><a href="#urea"> Urea Coolers</a></li>
<li><a href="#urea"> Urea Coolers</a></li>
-
                <li><a href="#manabi"> Human Practice</a></li>
+
<li><a href="#manabi"> Human Practice</a></li>
</ul>
</ul>
 +
</div><br />
 +
<div style="clear:both;float: left; left: 2px; position: static; width: 146px; top: 50px; border: 2px dotted #ff69b4; color:#ff69b4;">
 +
If you use IE9, please inactivate "Compatibility View". Otherwise, this page will not be displayed correctly.<br />
 +
To turn it OFF, click the button on the right side of the Address bar (if it's blue, it is ON).
</div>
</div>
</div>
</div>
Line 295: Line 315:
<h2 id="Overall"> Overview: Cool down in summer with our Rock-Paper-Scissors Game</h2>
<h2 id="Overall"> Overview: Cool down in summer with our Rock-Paper-Scissors Game</h2>
-
<img src="https://static.igem.org/mediawiki/2011/2/24/Happy-rps.png" width="50%" style="float:right;"/>
+
<img src="https://static.igem.org/mediawiki/2011/2/24/Happy-rps.png" width="408px" alt="Project Overview" style="float:right;" />
<p>
<p>
-
When summer comes it brings vacations, so students have plenty time to have fun. But summer means hot weather! In light of these circumstances, we designed a game that can be played between<i> E.coli</i> and humans, and that the winner of the game can get refreshing prizes! Dear students, let us introduce you to the first human-bacteria Rock-Paper-Scissors game! Win and get a rain shower, plus a “urea cooler”!
+
When summer comes it brings vacations, so students have plenty time to have fun.  
 +
But summer means hot weather! In light of these circumstances,  
 +
we designed a game that can be played between<span class="name"> E.coli</span> and humans.
 +
The winner of the game can get refreshing prizes!  
 +
Dear students and judges, let us introduce you to the first human-bacteria Rock-Paper-Scissors game!  
 +
Win and get a rain shower and a &ldquo;urea cooler&rdquo;!
</p>
</p>
   
   
-
<h2 id="RPS"> Rock-Paper-Scissors (RPS) Game</h2>
+
<h2 id="RPS"> Rock-Paper-Scissors (RPS) Game </h2>
-
<img src="https://static.igem.org/mediawiki/2011/1/10/TokyoTech_home_fig2.png" alt="RPS" class="fig" />
+
<img src="https://static.igem.org/mediawiki/2011/1/10/TokyoTech_home_fig2.png" alt="RPS" width="480px" class="fig" />
<p>
<p>
-
So, how to play RPS with a handless bacteria? Instead of hands, we use different signaling molecules corresponding either to rock, paper or scissors. In our set of six signaling molecules, humans use IPTG, aTc and salicylate, and E. coli uses 3O-C6-HSL, 3O-C12-HSL and AI-2. In each case, these signaling molecules correspond to rock, paper and scissors respectively.
+
So, how to play RPS with a handless bacteria?  
 +
Instead of hands, we use different signaling molecules corresponding  
 +
either to rock, paper or scissors.  
 +
In our set of six signaling molecules, humans use IPTG,  
 +
aTc and salicylate, and <span class="name">E. coli</span> uses  
 +
3OC6-HSL, 3OC12-HSL and AI-2. In each case,  
 +
these signaling molecules correspond to rock, paper and scissors respectively.
</p>
</p>
 +
<p>
<p>
-
The next step is to design a way to know who wins the RPS game. That is when the<i> E. coli</i> judge team comes in! Each judge has an AND-gate promoter which produces a single output based on two inputs, human side and<i> E.coli</i> side signaling molecules. Since we want the output to be visible, we use either GFP, RFP or CFP to indicate whether humans win, lose or it is a tie, respectively.  
+
The next step is to design a way to know who wins the RPS game.  
 +
That is when the<span class="name"> E. coli</span> judge team comes in!  
 +
Each judge has an AND-gate promoter which produces a single output  
 +
based on two inputs, human side and<span class="name"> E.coli</span>  
 +
side signaling molecules. Since we want the output to be visible,  
 +
we use either GFP, RFP or CFP to indicate whether humans win,  
 +
lose or it is a tie, respectively.  
</p>
</p>
 +
<p>
<p>
-
                Lastly, we need to make sure <span  class="name">E. coli</span> follows the rules of the game by synthetizing only one signaling molecule every time it plays. Importantly, we have to design the opponent <span class="name">E. coli</span> to be able to choose its signal randomly for a fare game, because <i>E. coli</i> will continue to lose if<i> E. coli</i> always produce same signaling molecule. In a view of these needs, we designed three randomizers that satisfy the conditions for the game. Single Colony Isolation, Survival of single strain and Conditional Knockout.<a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/RPS-game/index.htm">(see more...)</a>
+
Lastly, we need to make sure <span  class="name">E. coli</span> follows  
 +
the rules of the game by synthetizing only one signaling molecule  
 +
every time it plays. Importantly, we have to design the opponent  
 +
<span class="name">E. coli</span> to be able to choose its signal  
 +
randomly for a fair game, because <span class="name">E. coli</span>  
 +
will continue to lose if it always produces the same signaling
 +
molecule. In a view of these needs, we designed three randomizers that
 +
satisfy the conditions for the game:Single Colony Isolation, Survival  
 +
of One Strain and Conditional Knockout.  
 +
<a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/RPS-game/index.htm">(see more...)</a>
</p>
</p>
   
   
-
<h2 id="rain"> Make it Rain</h2>
+
<h2 id="rain"> Make it Rain </h2>
-
<img src="https://static.igem.org/mediawiki/2011/7/7b/TokyoTech_home_fig3.png" alt="Raining" class="fig" />
+
<img src="https://static.igem.org/mediawiki/2011/7/7b/TokyoTech_home_fig3.png" alt="Raining" width="480px" class="fig" />
<p>
<p>
-
Playing RPS with <i>E. coli</i> during summer was fun, but, even if humans won, pleasures did not last long since we soon returned to complaining about the hot weather. As a prize for humans who win in our RPS game, we designed an <i>E. coli</i> that can make it rain, making the hot summer more fun and refreshing (let alone applications in agriculture). To make it rain, we constructed an isoprene synthetizing <span class="name">E. coli</span>. Photo-oxidized isoprene acts as a condensation nucleus(Colin D. O‘Dowd <i> et al</i>., 2002, Nature), which might cause rain, even though it is present in very low concentrations.<a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/making-rain/index.htm">(see more...)</a><br />
+
Playing RPS with <span class="name">E. coli</span> during summer was fun, but,  
 +
even if humans won, joy did not last long since we soon returned to  
 +
complaining about the hot weather. As a prize for humans who win in our RPS game,  
 +
we designed an <span class="name">E. coli</span> that can make it rain,  
 +
making the hot summer more fun and refreshing (let alone applications in agriculture).  
 +
To make it rain, we constructed an isoprene synthetizing <span class="name">E. coli</span>.  
 +
Photo-oxidized isoprene acts as a condensation nucleus(Leonardo Silva Santos <i>et al</i>.,2006),  
 +
which might cause rain, even in very low concentrations.
 +
<a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/making-rain/index.htm">(see more...)</a>
</p>
</p>
   
   
-
<h2 id="urea">Urea Coolers</h2>
+
<h2 id="urea"> Urea Coolers </h2>
-
<img src="https://static.igem.org/mediawiki/2011/e/ef/Home-urea.png" alt="Urea cooler" class="fig" />
+
<img src="https://static.igem.org/mediawiki/2011/e/ef/Home-urea.png" alt="Urea cooler" width="480px" class="fig" />
<p>
<p>
-
          Coolers can be made by adding urea to water, since dissolving urea in water is an endothermic reaction (-57.8 cal/g). We can make <i>E.coli</i> synthetize urea just by introducing a gene encoding arginase!
+
Coolers can be made by adding urea to water, since dissolving urea in water  
-
        </p>
+
is an endothermic reaction (-57.8 cal/g). We can make <span class="name">E.coli</span>  
-
        <p>
+
synthetize urea just by introducing a gene encoding arginase!
-
          To analyze how we obtain even more urea from our <i>E. coli</i>, elementary flux analysis (Schuste<i>et al.</i> 2000) identified metabolic routes that are both stoichiometrically and thermodynamically feasible for a group of enzymes. Making use of it we can tell which substrates and pathways are the best for obtaining more urea.<a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/Urea-cooler/index.htm">(see more...)</a> <br />
+
</p>
</p>
-
 
+
<p>
-
<h2 id="manabi"> Human Practice</h2>
+
To analyze how we obtain even more urea from our <span class="name">E. coli</span>,
-
        <img src="https://static.igem.org/mediawiki/2011/2/22/Manabi-ppt2.png" alt="Creating Perception" class="fig" />
+
we used elementary flux analysis (Schuste <i>et al.</i>, 2000) to identify
-
        <p>
+
-
          We love Synthetic Biology, and to share our passion with other people, we did educational activities as part of our human practices. We would like to spread what is made and aimed by synthetic biology and iGEM. For this event, we created “iGEM Card Game”, posters and questionnaire.<a href="https://2011.igem.org/Team:Tokyo_Tech/HumanPractice.htm">(see more...)</a><br />
+
-
        </p>
+
   
   
-
+
metabolic routes that are both stoichiometrically and thermodynamically
 +
 
 +
feasible for a group of enzymes. Making use of it we can tell which
 +
 +
                substrates and pathways are the best for obtaining
 +
               
 +
                more urea.<a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/Urea-cooler/index.htm">(see more...)</a>
 +
</p>
 +
 
 +
<h2 id="manabi"> Human Practice </h2>
 +
<img src="https://static.igem.org/mediawiki/2011/2/25/Creating_Perception_1.png" alt="Creating Perception" width="480px" class="fig" />
 +
<p>
 +
We love Synthetic Biology, and to share our passion with other people,
 +
we did educational activities as part of our human practices.
 +
We would like to spread the word about what is made and aimed by synthetic 
 +
biology and iGEM. To do so, we created the &ldquo;iGEM Card Game&rdquo; and several 
 +
                posters. We also measured our impact through a survey.
 +
<a href="https://2011.igem.org/Team:Tokyo_Tech/HumanPractice.htm">(see more...)</a>
 +
</p>
<!-- ############ End of main contents ############ -->
<!-- ############ End of main contents ############ -->
Line 341: Line 411:
</p>
</p>
<!-- end of under contents -->
<!-- end of under contents -->
 +
 +
<div style="bottom: 0;left: 30; position:fixed; background-color: #000000; opacity:0.8;">
 +
<a onclick="scrollTo(0,0);return false;" onfocus="this.blur();" style="color:#FFFFFF;">Return to Page Top</a>
 +
</div>
<!-- DO NOT WRITE UNDER HERE -->
<!-- DO NOT WRITE UNDER HERE -->
</body>
</body>
</html>
</html>

Latest revision as of 16:44, 28 October 2011


If you use IE9, please inactivate "Compatibility View". Otherwise, this page will not be displayed correctly.
To turn it OFF, click the button on the right side of the Address bar (if it's blue, it is ON).

iGEM Tokyo Tech 2011 Team

Overview: Cool down in summer with our Rock-Paper-Scissors Game

Project Overview

When summer comes it brings vacations, so students have plenty time to have fun. But summer means hot weather! In light of these circumstances, we designed a game that can be played between E.coli and humans. The winner of the game can get refreshing prizes! Dear students and judges, let us introduce you to the first human-bacteria Rock-Paper-Scissors game! Win and get a rain shower and a “urea cooler”!

Rock-Paper-Scissors (RPS) Game

RPS

So, how to play RPS with a handless bacteria? Instead of hands, we use different signaling molecules corresponding either to rock, paper or scissors. In our set of six signaling molecules, humans use IPTG, aTc and salicylate, and E. coli uses 3OC6-HSL, 3OC12-HSL and AI-2. In each case, these signaling molecules correspond to rock, paper and scissors respectively.

The next step is to design a way to know who wins the RPS game. That is when the E. coli judge team comes in! Each judge has an AND-gate promoter which produces a single output based on two inputs, human side and E.coli side signaling molecules. Since we want the output to be visible, we use either GFP, RFP or CFP to indicate whether humans win, lose or it is a tie, respectively.

Lastly, we need to make sure E. coli follows the rules of the game by synthetizing only one signaling molecule every time it plays. Importantly, we have to design the opponent E. coli to be able to choose its signal randomly for a fair game, because E. coli will continue to lose if it always produces the same signaling molecule. In a view of these needs, we designed three randomizers that satisfy the conditions for the game:Single Colony Isolation, Survival of One Strain and Conditional Knockout. (see more...)

Make it Rain

Raining

Playing RPS with E. coli during summer was fun, but, even if humans won, joy did not last long since we soon returned to complaining about the hot weather. As a prize for humans who win in our RPS game, we designed an E. coli that can make it rain, making the hot summer more fun and refreshing (let alone applications in agriculture). To make it rain, we constructed an isoprene synthetizing E. coli. Photo-oxidized isoprene acts as a condensation nucleus(Leonardo Silva Santos et al.,2006), which might cause rain, even in very low concentrations. (see more...)

Urea Coolers

Urea cooler

Coolers can be made by adding urea to water, since dissolving urea in water is an endothermic reaction (-57.8 cal/g). We can make E.coli synthetize urea just by introducing a gene encoding arginase!

To analyze how we obtain even more urea from our E. coli, we used elementary flux analysis (Schuste et al., 2000) to identify metabolic routes that are both stoichiometrically and thermodynamically feasible for a group of enzymes. Making use of it we can tell which substrates and pathways are the best for obtaining more urea.(see more...)

Human Practice

Creating Perception

We love Synthetic Biology, and to share our passion with other people, we did educational activities as part of our human practices. We would like to spread the word about what is made and aimed by synthetic biology and iGEM. To do so, we created the “iGEM Card Game” and several posters. We also measured our impact through a survey. (see more...)

Return to Page Top