Team:Osaka/Collaborations

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<h2>Collaborations</h2>
<h2>Collaborations</h2>
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<h3>Participation in iGEM Japan</h3>
<h3>Participation in iGEM Japan</h3>
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<a href="http://igemjapan.net">iGEM Japan</a> is an alliance of Japanese iGEM teams conceived as a platform for enhancing communication and cooperation between teams, as well as collectively promoting iGEM in Japan. We participated in several meetings to discuss the direction, membership and activities of this group. Two of iGEM Japan's major activities this year were the <a href="https://2010.igem.org/Japan_Meetup_2010">iGEM Japan Meet-up</a> and a comprehensive, nation-wide <a href="https://2010.igem.org/Team:Osaka/HumanPractice#Introduction">Human Practices</a> survey. Please look at the <a href="https://2010.igem.org/Team:Osaka/HumanPractice#Introduction">result</a> for further information. <br>
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<a href="http://igemjapan.net">iGEM Japan</a> is an alliance of Japanese iGEM teams conceived as a platform for enhancing communication and cooperation between teams, as well as collectively promoting iGEM in Japan. We participated in several meetings to discuss the direction, membership and activities of this group. Two of iGEM Japan's major activities this year were the <a href="https://2011.igem.org/Japan_Meetup_2011">iGEM Japan Meet-up</a> and a comprehensive, nation-wide <a href="https://2011.igem.org/Team:Osaka/HumanPractice">Human Practices</a> survey. Please look at the <a href="https://2011.igem.org/Team:Osaka/HumanPractice">result</a> for further information. </p>
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<img src="https://static.igem.org/mediawiki/2010/7/7a/Japanosakahumanpracticephoto.JPG" height="180" alt="Fig.1/Taking survay" >
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<img src="https://static.igem.org/mediawiki/2011/8/80/Osaka_iGEM_japan.jpg" height="180" alt="Fig.1/Taking survay" >
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<h3>Joint proposal for Request for Comments (RFC)</h3>
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<h3>Attributions & Acknowledgements</h3>
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The iGEM teams of Osaka and Edinburgh encountered similar problems in designing PCR primers incorporating the standard BioBrick Prefix and Suffix. Together, we drafted and submitted a joint proposal for a Request for Comments which was accepted as <a href="http://bbf.openwetware.org/RFC.html#BBF_RFC_54:_Abbreviated_BioBrick_Prefix_and_Suffix_for_More_Efficient_Primer_Design">BBF RFC 54</a>.
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<p>We take pride in the fact that all experimental work - part design, construction and testing - were done by ourselves, without relying on outside help. However, directly or indirectly our project has benefited from help from the following parties:</p>
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<h3>Help received from other teams</h3>
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<li><a href="https://igem.org/Team.cgi?id=322">Edinburgh</a> provided us with <i>C. firmi</i> beta-glucosidase part</li>
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<li><b>Professor Muranaka</b> and all the members of <a href="http://www.bio.eng.osaka-u.ac.jp/pl/index.html">Cell Tech Lab</a> at Osaka University for lending us lab space and putting up with our intrusion</li>
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<li><a href="https://igem.org/Team.cgi?id=416">New York</a> provided us with yeast secretion tag and Aga2 display tag</li>
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<li><a href="https://igem.org/Team.cgi?id=390">Utah</a> provided us with HlyA, TolA, Gene III tags</li>
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<h3>Our contributions</h3>
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<li><b>Issay Narumi</b> of <a href="http://www.taka.jaea.go.jp/rab_div/en/grr/index_e.html">Ion Beam Mutagenesis Research Group</a> at Japan Atomic Energy Agency for supplying us with <i>D.radiodurans</i> genomic DNA as well as helpful information and invaluable advice concerning the RecA promoter, etc</li>
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We helped the iGEM team of <a href="https://igem.org/Team.cgi?id=378">ECUST-Shanghai</a> by sending them parts from our 2009 stock.
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<li><b>Professor Hayano</b> of <a href="http://nucl.phys.s.u-tokyo.ac.jp/hayano/en/home.html">the laboratory of Hayano </a>at the University of Tokyo and <a href="http://asacusa.web.cern.ch/ASACUSA/">ASACUSA</a> at CERN for invaluable advice concerning biodosimetry and dosimeter.</li>
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<h3>Acknowledgements</h3>
 
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<li><b>Professor Muranaka</b> and all the members of Cell Tech Lab for lending us lab space and putting up with our intrusion</li>
 
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<li><b>Chris French</b> from Edinburgh for lots of helpful advice on cellulase degradation, primer design, drafting an RFC and iGEM in general</li>
 
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<li><b>Damian Barnard</b> from Edinburgh for the C. firmi beta-glucosidase part as well as assay protocols</li>
 
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<li><b>Russell Durett</b> from NYU for yeast secretion and cell display tags, sequence data and helpful info</li>
 
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<li><b>Charles Miller</b> from Utah for E. coli secretion tags</li>
 
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<li><b>Makoto Ashiuchi</b> of United Graduate School of Agricultural Sciences, Kochi University for the polyglutamate synthase and glutamate racemase genes</li>
 
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<li><b>Shuichi Karita</b> of Faculty of Bioresources, Mie University for cellulase and CBM genes</li>
 
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Latest revision as of 01:20, 17 October 2011

Collaborations

Participation in iGEM Japan

iGEM Japan is an alliance of Japanese iGEM teams conceived as a platform for enhancing communication and cooperation between teams, as well as collectively promoting iGEM in Japan. We participated in several meetings to discuss the direction, membership and activities of this group. Two of iGEM Japan's major activities this year were the iGEM Japan Meet-up and a comprehensive, nation-wide Human Practices survey. Please look at the result for further information.

Fig.1/Taking survay

Attributions & Acknowledgements

We take pride in the fact that all experimental work - part design, construction and testing - were done by ourselves, without relying on outside help. However, directly or indirectly our project has benefited from help from the following parties:

  • Professor Muranaka and all the members of Cell Tech Lab at Osaka University for lending us lab space and putting up with our intrusion
  • Issay Narumi of Ion Beam Mutagenesis Research Group at Japan Atomic Energy Agency for supplying us with D.radiodurans genomic DNA as well as helpful information and invaluable advice concerning the RecA promoter, etc
  • Professor Hayano of the laboratory of Hayano at the University of Tokyo and ASACUSA at CERN for invaluable advice concerning biodosimetry and dosimeter.