"
Team:CBNU-Korea/Methods/Com
From 2011.igem.org
(Difference between revisions)
Achievstar (Talk | contribs) |
|||
| Line 84: | Line 84: | ||
#logo{ | #logo{ | ||
| - | width: | + | width:900px; |
background:transparent; | background:transparent; | ||
overflow:auto; | overflow:auto; | ||
| Line 105: | Line 105: | ||
</div> | </div> | ||
| - | <div id="test" style=" background:transparent; overflow:auto;"> | + | <div id="test" style="width:900px; background:transparent; overflow:auto;"> |
<br><font color=white size="4" face="Tahoma"> | <br><font color=white size="4" face="Tahoma"> | ||
1. DoriC DataBase<br> | 1. DoriC DataBase<br> | ||
Revision as of 20:54, 5 October 2011
1. DoriC DataBase
1-1. Parse oriC region of Genome from DoriC site.
1-2. Calculate Terminus from Parced Data
2. Essential Gene Pool
2-1. Parse 15 species essential gene from DEG site.
2-2. Get data(Strand, StartPoint, EndPoint, etc) from every NC files.
2-3. base on these data, calculate Distance To the Origin(DTO), Scale, Direction, etc.
3. Distribute Essential Gene Pool By COG to compile statistics.
3-1. make DB of deg15_eg_cog that named table by EGName and COG.(ex. Acinetobacter_a, Acinetobacter_b, ...)
3-2. make DB of deg15_cog that named table by COG.(ex. a,b,c......z)
4. Analysis the data.
4-1. Analysed DB of deg15.
5. 1080 species DB
5-1. Download NC files from ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/
5-2. First step is to check whether a data is existing or not by matching individually between NC file and DoriC DB.
5-3. Second step is that if there is a data, then confirm whether a GenomeSize is same between NC file and DB.
5-4. last step. if it is same, the data goes to DB.
6. Discover which things are in common between 15 species essential genes.
6-1. Find genes that COG Number, strand, scale, and Direction are same from Distributed Essential Gene Pool by COG.
