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Team:CBNU-Korea/Method GOD
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<br><font color=white size="4" face="Tahoma"> | <br><font color=white size="4" face="Tahoma"> | ||
<B>Essential Gene?</B><br> | <B>Essential Gene?</B><br> | ||
All of the organism must have essential genes for surviving in environment. All essential genes have specific essential biological function such as replication, transcription, translation and metabolism, etc. The essential gene is an element of genome, also life.<br><br> | All of the organism must have essential genes for surviving in environment. All essential genes have specific essential biological function such as replication, transcription, translation and metabolism, etc. The essential gene is an element of genome, also life.<br><br> | ||
| - | what we try to, with essential genes? <br> | + | <B>what we try to, with essential genes? </B><br> |
If user wants to have characterized microbes, user should has to know what genome of the organism has, and then should design the microbe genome. For characterized alive microbes, they must have several essential genes. So we try to develop software that can help user design artificial genome or chromosome with several essential genes which is in our essential gene database.<br><br> | If user wants to have characterized microbes, user should has to know what genome of the organism has, and then should design the microbe genome. For characterized alive microbes, they must have several essential genes. So we try to develop software that can help user design artificial genome or chromosome with several essential genes which is in our essential gene database.<br><br> | ||
| - | Data Parsing<br> | + | <B>Data Parsing</B><br> |
Stored MySQL Database Using Java & BioJava <br> | Stored MySQL Database Using Java & BioJava <br> | ||
<center> | <center> | ||
| - | <img src="https://static.igem.org/mediawiki/2011/0/01/Synb%EC%97%B0%EA%B5%AC%EB%82%B4%EC%9A%A91.png"><br> | + | <img src="https://static.igem.org/mediawiki/2011/0/01/Synb%EC%97%B0%EA%B5%AC%EB%82%B4%EC%9A%A91.png" width="468px" height="446px"><br><br> |
</center> | </center> | ||
| - | Data Processing<br> | + | <B>Data Processing</B><br> |
<center> | <center> | ||
| - | <img src="https://static.igem.org/mediawiki/2011/d/de/SynB%EC%97%B0%EA%B5%AC%EB%82%B4%EC%9A%A92.png"><br> | + | <img src="https://static.igem.org/mediawiki/2011/d/de/SynB%EC%97%B0%EA%B5%AC%EB%82%B4%EC%9A%A92.png" width="567px" height="573px"><br><br> |
</center> | </center> | ||
| - | Making Essential genes Pool<br> | + | <B>Making Essential genes Pool</B><br> |
<center> | <center> | ||
| - | <img src="https://static.igem.org/mediawiki/2011/b/b1/Synb%EC%97%B0%EA%B5%AC%EB%82%B4%EC%9A%A93.png"><br> | + | <img src="https://static.igem.org/mediawiki/2011/b/b1/Synb%EC%97%B0%EA%B5%AC%EB%82%B4%EC%9A%A93.png"><br><br> |
</center> | </center> | ||
| - | Analogy of Essential genes<br> | + | <B>Analogy of Essential genes</B><br> |
If the analysis method of 15 species of DEG is applied, other essential genes in many organisms which are not finished the Genome project could be analogized by using the information of the analogized essential genes in DEG.<br> | If the analysis method of 15 species of DEG is applied, other essential genes in many organisms which are not finished the Genome project could be analogized by using the information of the analogized essential genes in DEG.<br> | ||
<br> | <br> | ||
| - | Analysis of essential genes<br> | + | <B>Analysis of essential genes</B><br> |
| - | The study on the Essential gene’s position of microorganism species of 1500 about origin. We analysis NC file’s various parameters (Strand, Direction, COG, EG, DistToOri, etc.) to study distribution of essential gene. The Strand, Direction, COG, EG, DistToOri was used from the various parameters.<br> | + | The study on the Essential gene’s position of microorganism species of 1500 about origin. We analysis NC file’s various parameters (Strand, Direction, COG, EG, DistToOri, etc.) to study distribution of essential gene. The Strand, Direction, COG, EG, DistToOri was used from the various parameters.<br><center><img src="https://static.igem.org/mediawiki/2011/7/71/Synb_GOD_pic1.png"></center><br><br> |
| - | GOD,Genome Organization database & Designer<br> | + | <B>GOD,Genome Organization database & Designer</B><br> |
<center> | <center> | ||
| - | <img src="https://static.igem.org/mediawiki/2011/5/53/SynB%EC%97%B0%EA%B5%AC%EB%82%B4%EC%9A%A94.png"><br> | + | <img src="https://static.igem.org/mediawiki/2011/5/53/SynB%EC%97%B0%EA%B5%AC%EB%82%B4%EC%9A%A94.png" width="567px" height="412px"><br> |
| + | <img src="https://static.igem.org/mediawiki/2011/a/aa/Synb_GOD_pic2.png"><br> | ||
</center> | </center> | ||
</font> | </font> | ||
| + | </div> | ||
</body> | </body> | ||
</HTML> | </HTML> | ||
Latest revision as of 20:53, 5 October 2011
Essential Gene?
All of the organism must have essential genes for surviving in environment. All essential genes have specific essential biological function such as replication, transcription, translation and metabolism, etc. The essential gene is an element of genome, also life.
what we try to, with essential genes?
If user wants to have characterized microbes, user should has to know what genome of the organism has, and then should design the microbe genome. For characterized alive microbes, they must have several essential genes. So we try to develop software that can help user design artificial genome or chromosome with several essential genes which is in our essential gene database.
Data Parsing
Stored MySQL Database Using Java & BioJava
If the analysis method of 15 species of DEG is applied, other essential genes in many organisms which are not finished the Genome project could be analogized by using the information of the analogized essential genes in DEG.
Analysis of essential genes
The study on the Essential gene’s position of microorganism species of 1500 about origin. We analysis NC file’s various parameters (Strand, Direction, COG, EG, DistToOri, etc.) to study distribution of essential gene. The Strand, Direction, COG, EG, DistToOri was used from the various parameters.
GOD,Genome Organization database & Designer
