Team:USTC-China/Notebook/1

From 2011.igem.org

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<div id="col_nav">
<div id="col_nav">
     <div class="col_list">
     <div class="col_list">
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         <h2></h2>
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         <h2>Weeks</h2>
<ul>
<ul>
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    <li id="yhl"><h1>jun 28-july 4<h1></li>
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    <li id="yhl">Jun 28-July 2</li>
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    <li id="swl">july 5-july 11</li>
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    <li id="swl">July 3-July 9</li>
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    <li id="zlc">3</li>
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    <li id="zlc">July 10-July 16</li>
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    <li id="fzz">4</li>
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    <li id="fzz">July 17-July 23</li>
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    <li id="shl">5</li>
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    <li id="shl">July 24-July 30</li>
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    <li id="ml">6</li>
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    <li id="ml">July 31-Aug 6</li>
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    <li id="mps">7</li>
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    <li id="mps">Aug 7-Aug 13</li>
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             <li id="yfl">8</li>
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             <li id="yfl">Aug 14-Aug 20</li>
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    <li id="dz">9</li>
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    <li id="dz">Aug 21-Aug 27</li>
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    <li id="lna">10</li>
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    <li id="lna">Aug 28-Sep 3</li>
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    <li id="jhp">11</li>
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    <li id="jhp">Sep 4-Sep 10</li>
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    <li id="xlz">12</li>
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    <li id="xlz">Sep 11-Sep 17</li>
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             <li id="wyy">13</il>  
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             <li id="wyy">Sep 18-Sep 24</il>  
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    <li id="ytl">14</li>
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    <li id="ytl">Sep 25-Oct 1</li>
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             <li id="nw">15</li>
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             <li id="nw">Oct 2-Oct 8</li>
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             <li id="yz">16</il>  
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             <li id="yz">Oct 9-Oct 15</il>  
            
            
</ul>
</ul>
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<div class="bio" id="yhlbio">
<div class="bio" id="yhlbio">
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<h1>jun 28-july 4</h1>
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<h1>jun 28-july 2</h1>
</html>
</html>
2011.6.28
2011.6.28
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while the concentration of PCR product is pretty high,demonstrating that the plasmids indeed contains the sagment CheZ.
while the concentration of PCR product is pretty high,demonstrating that the plasmids indeed contains the sagment CheZ.
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<html>
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<div class="clear"></div>
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</div>
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<div class="bio" id="swlbio">
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<h1>July 3-July 9</h1>
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7.3
7.3
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(LuxPr: Plate 2,24C  Terminator : Plate 1,6O)
(LuxPr: Plate 2,24C  Terminator : Plate 1,6O)
result: the bacteria on the plate with Amp resistency grows well
result: the bacteria on the plate with Amp resistency grows well
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</div>
 
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<div class="bio" id="swlbio">
 
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<h1>july 5-july 11</h1>
 
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</html>
 
7.5
7.5
----
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<div class="clear"></div>
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</div>
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<div class="bio" id="zlcbio">
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<h1>July 10-July 16</h1>
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7.10
7.10
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transform PSB1C3 containing aptamer-CheZ into bacteria and cultivate.
transform PSB1C3 containing aptamer-CheZ into bacteria and cultivate.
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</div>
 
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<div class="bio" id="zlcbio">
 
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<h1>july 12-july18</h1>
 
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7.12
7.12
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result:failure
result:failure
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7.18-7.21
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----
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ligate the standard part Terminator to the end of toggle switch
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-
result: we conduct a enzyme digestion with EcoR1 and Pst1 to the final ligation product and the electrophoresis result shows that the ligation is successful.
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<html>
<html>
</div>
</div>
<div class="bio" id="fzzbio">
<div class="bio" id="fzzbio">
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<h1>Fangzhou Zhao</h1>
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<h1>July 17-July 23</h1>
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<img src="" style="max-width:250px; margin-right:10px;"/>
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7.18-7.21
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Hi,everyone!I am Zhao Fangzhou, a sophomore student majoring in Life Science in USTC. Born in the autumn of 1991, I was lucky enough to enjoy a 21-year life filled with happiness and sadness. Shangrao, located in the northeast of Jiangxi Province, is the very place where I was brought up. This beautiful town, positioned in Southern China, with its natural scenery and cultural heritage, has been teaching me how to handle with my own life and with the whole world. Over the years before, I have developed interests in a variety of occupations, like reading books, playing computer games and various ball games. However, since the day I was admitted into USTC, I began to devote much of my time to studying, and correspondingly cut down the time spent on after-class activities, expecting that two years later, I can walk out of this university without any regret. <br/>
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----
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</html>[[File:赵方舟.jpg|500px]]<html>
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ligate the standard part Terminator to the end of toggle switch
 +
result: we conduct a enzyme digestion with EcoR1 and Pst1 to the final ligation product and the electrophoresis result shows that the ligation is successful.
<div class="clear"></div>
<div class="clear"></div>
</div>
</div>
<div class="bio" id="shlbio">
<div class="bio" id="shlbio">
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<h1>Shaohua Li</h1>
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<h1>July 24-July 30</h1>
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<img src="" style="max-width:250px; margin-right:10px;"/> Name:  Shaohua LiO(∩_∩)O！<br/>
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7.22-7.29
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Email: lsh7763@mail.ustc.edu.cn<br/>
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----
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Education: School of Life Sciences, USTC<br/>
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perform the following experiments: PCR of rbs-ci-ter, enzyme digestion(E,S),ligation with LuxPR(standard part from IGEM registry digested by E,X),tranformation,plasmids extraction.
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Major:  Medicinal Biotechnology<br/>
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result: the concentration of plasmids with ligation gene is as high as ...
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Hobby: take trips<br/>
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-
Motto:Eat well,sleep well. In the meantime ,play with Ecoli.↖(^ω^)↗<br/>
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</html>[[File:Lishaohua.jpg]]<html>
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<div class="bio" id="mlbio">
<div class="bio" id="mlbio">
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<h1>Mo Li</h1>
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<h1>July 31-Aug 6</h1>
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<img src="" style="max-width:250px; margin-right:10px;"/>
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7.30-8.3
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Mo Li:Symbol of element 3, that is Li,Lithium./Symbol of element 42,Molybenum,that is Mo./What if they react with each other? /Bimetal?/Not excatly./It's Li Mo/That's me！motto: E.coli is my lovely pet!
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<div class="clear"></div>
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PCR of LuxPR-rbs-ci-ter, enzyme digestion(E,S),ligation with LuxPR(standard part from IGEM registry digested by E,X),tranformation,plasmids extraction.
</div>
</div>
<div class="bio" id="mpsbio">
<div class="bio" id="mpsbio">
-
<h1>Mengping Sun</h1>
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<h1>Aug 7-Aug 13</h1>
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<img src="" style="max-width:250px; margin-right:10px;"/>
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Hi, I'm Mengping Sun, an IGEMer of team USTC-China. This is my last year as an undergraduate student and I am pround of being an IGEM fan. IGEM not only marks a start for my reserch career but also is a good way to meet many friends from all over the world. As for me, I am a person who love sports, movies and chatting with others. Being an IGEMer is lucky for the world becomes smaller when we have one commom dream. And it's a great honor to fulfill it in MIT.
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<div class="bio" id="yflbio">
<div class="bio" id="yflbio">
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<h1>Yufeng Luo</h1>
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<h1>Aug 14-Aug 20</h1>
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<img src="" style="max-width:250px; margin-right:10px;"/>
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Hello, everyone, I’m Yufeng Luo, an undergraduate from USTC-China team. My major is Chemistry. I’m honored to join the IGEM2011 competition, the memory of which will never be forgotten in my life.During last seven months I’ve being studied and worked with our teammates. In our project, I take part our experiments in constructing our system. We spent lots of time together, it’s not happy all the time, but every minites is meaningful. As The Grand Final coming,we are confident to have a good result. Best wishes(∩_∩).
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</html>[[File:Lyf.jpg|300px|left]][[File:Lyf1.png|right]]<html>
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</div>
</div>
<div class="bio" id="nwbio">
<div class="bio" id="nwbio">
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<h1>Ning Wang</h1>
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<h1></h1>
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<img src="" style="max-width:250px; margin-right:10px;"/>
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<div class="bio" id="ytlbio">
<div class="bio" id="ytlbio">
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<h1>Yuntao Liu</h1>
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<h1></h1>
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<div class="bio" id="dzbio">
<div class="bio" id="dzbio">
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<h1>Dan Zhou</h1>
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<h1></h1>
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<img src="" style="max-width:250px; margin-right:10px;"/>
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-
Name:Dan Chou<br/>
+
-
Email: zhoudan@mail.ustc.edu.cn<br/>
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-
Study field: Chemistry<br/>
+
-
Interests: Music&Movies<br/>
+
-
Research Interest: Biochemistry<br/>
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-
    I am the clerk and the manager of USTC-China 2011 iGEM team, and I am the secretary-general of 2011 iGEM China-meetup. I also participated in the experiment of constructing the prompter, aptamer, cheZ and GFP together. I feel this enjoyable all the time.
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</html>[[File:Danzhou.png]]<html>
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<div class="bio" id="lnabio">
<div class="bio" id="lnabio">
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<h1>Linna An</h1>
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<h1></h1>
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<img src="" style="max-width:300px; margin-right:10px;"/>
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-
Hi,I'm Anlina,and my Chinese name is also Linna An.I am now a new sophomore in USTC,the department of Chemistry and Material Science.I designed the wiki,completed it with my friend Yuntao Liu,and did some experiments with other teammates.But the most valuable experience is that I participated a complete project,which will definately help with my career.Not everything is easy,but there is always others to help.Not every day is happy,yet all the difficulties made what we are.When there is will,there is way!
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<div class="bio" id="jhpbio">
<div class="bio" id="jhpbio">
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<h1>Junhui Peng</h1>
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<h1></h1>
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<img src="" style="max-width:300px; margin-right:10px;"/>
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-
Junhui Peng
+
 
-
Senior undergraduate in Lab of Computational Biology, School of Life Sciences, USTC.
+
-
I think, it must be very exciting to find and understand the principles of how macromolecules organize in universe. In iGEM lab and compubio lab, you can try to build your own principles for bacteria and for macromolecules. Badminton is my favorite sport, and Defense of the Ancients is my favorite computer game.
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<div class="bio" id="yywbio">
<div class="bio" id="yywbio">
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<h1>Yanyue Wang</h1>
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<h1></h1>
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<img src="" style="max-width:300px; margin-right:10px;"/>
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I am Wang Yanyue from Department of Material Science and Engineering. You can call me Era for short. In our team I am in charge of the Human Practice part and also make my contribution to performing some experiments. The reason why I joined the team was that biology is so mysterious and fancy for an outsider like me, and I wish one day I may be able to untangle some of the fascinating enigmas of living creatures.Well, it is a bliss that we are living in such a wonderful world with so many lovely people caring about each other. We are so young and have the hearts to live what seemed impossible and challenging. As long as we have enough courage and wit, we are the ones who can make a change!
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</div>
<div class="bio" id="xlzbio">
<div class="bio" id="xlzbio">
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<h1>Xiaolei Zhang</h1>
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<h1></h1>
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<img src="" style="max-width:300px; margin-right:10px;"/>
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My name is Xiaolei Zhang,an undergraduate of system biology in USTC. While I began to cast doubt on the my conviction of studying biology,synthetic biology with the iGEM came to touch me, fascinating me with its innovative application of engineering idea in biology.In retrospect,all the diverse elements in this iGEM trip make me to see biology and scientific research from a refreshing point of view.Anyway,whether our research is serious enough,I take it seriously and cherish this iGEM trip.
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</html>[[File:Zxl.jpg]]<html>
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<div class="clear"></div>
<div class="clear"></div>
</div>
</div>
<div class="bio" id="yzbio">
<div class="bio" id="yzbio">
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<h1>Yang Zhou</h1>
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<h1></h1>
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<img src="" style="max-width:300px; margin-right:10px;"/>
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<div class="clear"></div>
<div class="clear"></div>
</div>
</div>
<div class="bio" id="wyybio">
<div class="bio" id="wyybio">
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<h1>Yanyue Wang</h1>
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<h1></h1>
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<img src="" style="max-width:300px; margin-right:10px;"/>
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-
I am Wang Yanyue from Department of Material Science and Engineering. You can call me Era for short. In our team I am in charge of the Human Practice part and also make my contribution to performing some experiments. The reason why I joined the team was that biology is so mysterious and fancy for an outsider like me, and I wish one day I may be able to untangle some of the fascinating enigmas of living creatures.
+
-
Well, it is a bliss that we are living in such a wonderful world with so many lovely people caring about each other. We are so young and have the hearts to live what seemed impossible and challenging. As long as we have enough courage and wit, we are the ones who can make a change!
 
-
</html>[[File:Wyy.jpg]]<html>
 
<div class="clear"></div>
<div class="clear"></div>
</div>
</div>

Latest revision as of 17:05, 3 October 2011

Weeks

  • Jun 28-July 2
  • July 3-July 9
  • July 10-July 16
  • July 17-July 23
  • July 24-July 30
  • July 31-Aug 6
  • Aug 7-Aug 13
  • Aug 14-Aug 20
  • Aug 21-Aug 27
  • Aug 28-Sep 3
  • Sep 4-Sep 10
  • Sep 11-Sep 17
  • Sep 18-Sep 24
  • Sep 25-Oct 1
  • Oct 2-Oct 8
  • Oct 9-Oct 15

jun 28-july 2

2011.6.28

cultivate the bacteria of cheZ deficiency(RP1616),and the Control group(RP437). check the resistibility of RP1616 and RP437 result:both of the two groups are of none resistibility. members:Siwei Luo, Fangzhou Zhao, Zhilin Chen...

2011.6.29

check the motility of RP1616 strain and RP437 strain cultivate Top10 strain result: the bacterial plaque of RP1616 is smaller than that of RP437, implying that RP1616 is of cheZ deficiency, causing the decreased motility of the bacteria.


6.30

prepare for the competent cell of Top10 strain cultivated on 6.29 extract the genome of Top10 strain and use it as complates to run PCR of CheZ result: the concentration of PCR result is too low to continue the experiments.

7.1

conduct PCR of CheZ again ligate the CheZ DNA segment to plasmid PSb1C3, and transform it into Top10 competent cells result:as the picture shows.

7.2

pick up single colony from the Petri dish to reproduce, in which the competent cells are cultivated and use them colony PCR result:The bacteria grow up well on dishes with chloromycetin resistency，verifying that the transformation is successfull while the concentration of PCR product is pretty high,demonstrating that the plasmids indeed contains the sagment CheZ.


July 3-July 9

7.3

extract the plasmids from the reproduced bacteria and send it to check the base sequence result: the concentration of the plasmids extracted is about 500ng/uL

7.4

extract the standard parts LuxPR and Terminator from plate sent by iGEM registry 2010 and put them into Top10 strain by transformation (LuxPr: Plate 2,24C Terminator : Plate 1,6O) result: the bacteria on the plate with Amp resistency grows well 7.5

pick up single colony from the Petri dish to reproduce in the liquid culture medium


7.6

extract plasmids containing LuxPR and Terminator and make enzyme digestion with EcoR1 and Spe1 in order to validate the existence of the two parts recieve part Toggle Switch and rbs-Ci-ter from PKU and conduct transformation

result: Due to the short length of LuxPR and Terminator, the result of the enzyme digestion is hard to examine by electrophoresis.

7.7

result: there are a few colonies with part Toggle switch grown while no colony of rbs-Ci-ter appeared.

7.8

pick up single colony with part Toggle switch . extract the standard parts LuxPR and Terminator from plate sent by iGEM registry 2011 and put them into Top10 strain by transformation

7.9

pick up single colony with LuxPR & terminator. extract plasmids containing toggle switch to conduct PCR.

process PCR with plasmids aptamer-CheZ result:as the picture shows. the base sequence of CheZ extracted before is proved right.


July 10-July 16

7.10

ligate aptamer-CheZ with PSB1C3 plasmids

extract plasmids containing LuxPR and terminator result:the concentractions of plasmids LuxPR and terminator are both 600ng/ul

7.11

transform PSB1C3 containing aptamer-CheZ into bacteria and cultivate. 7.12

carry out Double digestion of toggle switch and pSB1c3 and ligate them together.

pick up single colony from bacteria cultivated yesterday.

result: Both the location and the brightness of the electrophoretic bands correspond with our expectation.

7.14

transform the part rbs-ci-ter sent from PKU again into bacteria. check the colors of the colonies containing toggle switch. result: the ratio of red vs green is 8:25, verifying the function of toggle switch.

7.15

pick up the single colony from the plate yesterday and ten hours later extract the plasmids containing Ci-terminator.


7.16

conduct PCR with the plasmids yesterday to reproduce rbs-ci-Term. result:failure


July 17-July 23

7.18-7.21 ---- ligate the standard part Terminator to the end of toggle switch result: we conduct a enzyme digestion with EcoR1 and Pst1 to the final ligation product and the electrophoresis result shows that the ligation is successful.

July 24-July 30

7.22-7.29 ---- perform the following experiments: PCR of rbs-ci-ter, enzyme digestion(E,S),ligation with LuxPR(standard part from IGEM registry digested by E,X),tranformation,plasmids extraction. result: the concentration of plasmids with ligation gene is as high as ...

July 31-Aug 6

7.30-8.3 ---- PCR of LuxPR-rbs-ci-ter, enzyme digestion(E,S),ligation with LuxPR(standard part from IGEM registry digested by E,X),tranformation,plasmids extraction.

Aug 7-Aug 13

Aug 14-Aug 20

Retrieved from "http://2011.igem.org/Team:USTC-China/Notebook/1"