Team:Bilkent UNAM Turkey/Protocols
From 2011.igem.org
(Difference between revisions)
(9 intermediate revisions not shown) | |||
Line 108: | Line 108: | ||
<h1> Growth Conditions </h1> | <h1> Growth Conditions </h1> | ||
- | + | <b>Tris Acetate Phosphate (TAP) medium</b> | |
- | + | ||
from Gorman, D.S., and R.P. Levine (1965) Proc. Natl. Acad. Sci. USA 54, 1665-1669.<br> | from Gorman, D.S., and R.P. Levine (1965) Proc. Natl. Acad. Sci. USA 54, 1665-1669.<br> | ||
Line 149: | Line 149: | ||
<br>For Tris-minimal medium omit the acetic acid and titrate the final solution to pH 7.0 with HCl | <br>For Tris-minimal medium omit the acetic acid and titrate the final solution to pH 7.0 with HCl | ||
<br> | <br> | ||
- | <br>Reference: | + | <br><b>Reference:</b><a href="http://www.chlamy.org/TAP.html">http://www.chlamy.org/TAP.html </a> |
- | <br> | + | <br><br> |
- | <br> | + | |
- | < | + | <br><b>Hutner's trace elements</b> |
<br> | <br> | ||
<br>Hutner et al. (1950) Proc. Am. Philos. Soc. 94, 152-170 | <br>Hutner et al. (1950) Proc. Am. Philos. Soc. 94, 152-170 | ||
Line 182: | Line 182: | ||
<br> | <br> | ||
<br>To prepare sulfur-free trace elements for hydrogen generation, the sulfate salts can be replaced with equimolar <br>chloride salts (ZnCl2 10.0 g; CuCl2 . 2 H2O 1.00 g; FeCl2 . 4 H2O, 3.60 g). . | <br>To prepare sulfur-free trace elements for hydrogen generation, the sulfate salts can be replaced with equimolar <br>chloride salts (ZnCl2 10.0 g; CuCl2 . 2 H2O 1.00 g; FeCl2 . 4 H2O, 3.60 g). . | ||
- | <br>Reference: | + | <br><b>Reference:</b><a href="http://www.chlamy.org/trace.html">http://www.chlamy.org/trace.html </a> |
+ | <br> | ||
<br> | <br> | ||
- | <br>A. Glass bead method for nuclear transformation of <i>Chlamydomonas reinhardtii</i> | + | <br><b>A. Glass bead method for nuclear transformation of <i>Chlamydomonas reinhardtii</i></b> |
- | <br>Materials. | + | <br><b>Materials.</b> |
<br>- Cell-wall deficient (e.g. cw15) host cell strain. (If you need to use a strain with a wild-type cell-wall, the <br>cells must be treated with autolysin prior to vortexing with glass beads (step 7).) | <br>- Cell-wall deficient (e.g. cw15) host cell strain. (If you need to use a strain with a wild-type cell-wall, the <br>cells must be treated with autolysin prior to vortexing with glass beads (step 7).) | ||
<br>- Sterile liquid growth medium (permissive for the host cell line). (Approximately 35mL of culture / transformation <br>plate.) | <br>- Sterile liquid growth medium (permissive for the host cell line). (Approximately 35mL of culture / transformation <br>plate.) | ||
Line 195: | Line 196: | ||
<br>- DNA with selection marker. (Circular, supercoiled DNA can be used, but in cases where single insertions are <br>desirable (e.g. insertional mutagenesis), a linear DNA fragment is preferable. The amount of DNA used will also <br>influence the number of insertions (approx. range: 0.2 – 1.0 ug / transformation). | <br>- DNA with selection marker. (Circular, supercoiled DNA can be used, but in cases where single insertions are <br>desirable (e.g. insertional mutagenesis), a linear DNA fragment is preferable. The amount of DNA used will also <br>influence the number of insertions (approx. range: 0.2 – 1.0 ug / transformation). | ||
<br> | <br> | ||
- | <br>Protocol. | + | <br><b>Protocol.</b> |
<br>1. Grow cells in appropriate medium (permissive) to a density of ~2 x 106/ mL. | <br>1. Grow cells in appropriate medium (permissive) to a density of ~2 x 106/ mL. | ||
<br>2. Collect cells by centrifugation in sterile centrifugation bottles at room temperature (3500 g x 10 min). Discard <br>supernatant. | <br>2. Collect cells by centrifugation in sterile centrifugation bottles at room temperature (3500 g x 10 min). Discard <br>supernatant. | ||
Line 209: | Line 210: | ||
<br>8. Pour the contents of the tube on a selective plate, gently tilt and rotate the plate to spread the medium <br>evenly. | <br>8. Pour the contents of the tube on a selective plate, gently tilt and rotate the plate to spread the medium <br>evenly. | ||
<br>9. Allow the liquid to dry (protect from light to avoid phototactic movements of the cells). Seal the plates with <br>Parafilm (Micropore tape for minimal medium), and incubate under appropriate conditions for selection. (If cells <br>were grown under auxotrophic conditions (acetate, dark) and will be selected for photoautotrophic growth (minimal, <br>light), put the plates in dim light for 16 – 24 hours before transferring to light. Colonies will appear within 1-3 <br>weeks depending on the selection applied.) | <br>9. Allow the liquid to dry (protect from light to avoid phototactic movements of the cells). Seal the plates with <br>Parafilm (Micropore tape for minimal medium), and incubate under appropriate conditions for selection. (If cells <br>were grown under auxotrophic conditions (acetate, dark) and will be selected for photoautotrophic growth (minimal, <br>light), put the plates in dim light for 16 – 24 hours before transferring to light. Colonies will appear within 1-3 <br>weeks depending on the selection applied.) | ||
- | <br>References: | + | <br><b>References:</b> |
<br>Kindle, K. (1990) High-frequency nuclear transformation of <i>Chlamydomonas reinhardtii</i>. Proc. Natl. Acad. USA 87: <br>1228-1232. | <br>Kindle, K. (1990) High-frequency nuclear transformation of <i>Chlamydomonas reinhardtii</i>. Proc. Natl. Acad. USA 87: <br>1228-1232. | ||
- | <br>B. Electroporation method for nuclear transformation of <i>Chlamydomonas reinhardtii</i> | + | <br><br><br><b>B. Electroporation method for nuclear transformation of <i>Chlamydomonas reinhardtii</i></b> |
- | <br>Materials | + | <br><b>Materials.</b> |
<br>- Cell-wall deficient host cell strain | <br>- Cell-wall deficient host cell strain | ||
<br>- Sterile centrifugation bottles and tubes | <br>- Sterile centrifugation bottles and tubes | ||
Line 230: | Line 231: | ||
<br>Wash 4 times with TAP + sucrose 40 mM | <br>Wash 4 times with TAP + sucrose 40 mM | ||
<br>Resuspend in 20 ml of TAP + sucrose 40 mM + PEG 8 000 0.4% | <br>Resuspend in 20 ml of TAP + sucrose 40 mM + PEG 8 000 0.4% | ||
- | <br>Protocol | + | <br><b>Protocol.</b> |
<br>1. Grow 250 ml of cells to a density of 2 x 106 cells/ml | <br>1. Grow 250 ml of cells to a density of 2 x 106 cells/ml | ||
<br>2. Collect cells by centrifugation at room temperature at 3 500 rpm for 5 minutes in sterile centrifugation <br>bottles. Discard supernatant | <br>2. Collect cells by centrifugation at room temperature at 3 500 rpm for 5 minutes in sterile centrifugation <br>bottles. Discard supernatant | ||
Line 243: | Line 244: | ||
<br>10. Allow the liquid to dry (protect from light), seal the plates with parafilm and incubate under appropriate <br>conditions for selection of transformants. | <br>10. Allow the liquid to dry (protect from light), seal the plates with parafilm and incubate under appropriate <br>conditions for selection of transformants. | ||
<br> | <br> | ||
- | <br>References. | + | <br><b>References.</b> |
<br>Boynton et al (1988) Chloroplast transformation in Chlamydomonas with high velocity microprojectiles. Science 240: <br>1534-1538. | <br>Boynton et al (1988) Chloroplast transformation in Chlamydomonas with high velocity microprojectiles. Science 240: <br>1534-1538. | ||
<br>Finer et al. (1992) Development of the particle inflow gun for DNA delivery to plant cells. Plant Cell Reports 11: <br>323-328. | <br>Finer et al. (1992) Development of the particle inflow gun for DNA delivery to plant cells. Plant Cell Reports 11: <br>323-328. |
Latest revision as of 01:55, 22 September 2011
There is a problem with poping up if you see this note.