Team:Lyon-INSA-ENS/Realisation/Week5

From 2011.igem.org

(Difference between revisions)
 
(35 intermediate revisions not shown)
Line 3: Line 3:
{{INSA-Lyon/styletestaurelie}}
{{INSA-Lyon/styletestaurelie}}
{{Lyon-INSA-ENS/menuhorizontal}}
{{Lyon-INSA-ENS/menuhorizontal}}
-
{{Lyon-INSA-ENS/menuNotebook}}
+
<!--{{Lyon-INSA-ENS/menuNotebookW5}}-->
 +
{{Lyon-INSA-ENS/menuNotebookVertical|Week 5 = actif}}
<html>
<html>
-
 
+
<div style="float : left; margin-top : -10px; margin-left : -200px">
-
 
+
  <a href="https://2011.igem.org/Main_Page" >
-
<style type="text/css">
+
      <img src="https://static.igem.org/mediawiki/2011/6/67/Team_INSA-Lyon_IGEM_Home.png" title="iGEM's main page" />
-
    .cadre{
+
  </a>
-
    text-align:center;
+
</div>
-
    width : 600px;
+
-
    height:float;
+
-
    margin-left : 50px ;  
+
-
    margin-top : 20px;
+
-
    border: 4px solid green;
+
-
    -moz-border-radius: 10px;
+
-
    -webkit-border-radius: 10px;
+
-
    -goog-ms-border-radius: 10px;
+
-
    border-radius: 10px;
+
-
    -moz-box-shadow: rgba(0, 0, 0, 0.3) 0px 0px 12px 7px;
+
-
    -webkit-box-shadow: rgba(0, 0, 0, 0.3) 0px 0px 12px 7px;
+
-
    -goog-ms-box-shadow: rgba(0, 0, 0, 0.3) 0px 0px 12px 7px;
+
-
    box-shadow: rgba(0, 0, 0, 0.3) 0px 0px 12px 7px;
+
-
    }
+
-
 
+
-
</style>
+
-
 
+
<body>
<body>
 +
 +
    <div id="language";>
 +
        <img src="https://static.igem.org/mediawiki/2011/0/0e/Drapeau_francais.jpg"; width=20px; /> <a href="/Team:Lyon-INSA-ENS/Realisation/Week5Fr">Version Fran&ccedil;aise</a>
 +
    </div>
<div class="contenugrand2";>
<div class="contenugrand2";>
-
<div class="cadre" ; style="background-color:green;" >
+
    <br/> <br/>
 +
    <br/>
 +
<div class="cadre" ; style="background-color:green;margin-left : 8%" >
     <br/>
     <br/>
     <h1 style="color: white;"> Week 5 </h1>     
     <h1 style="color: white;"> Week 5 </h1>     
Line 40: Line 30:
<br/>
<br/>
-
     <p style="text-align : center"> <small> From Monday the 4th of July to Friday the 8th of July 2011 </small> </p>
+
     <p style="text-align : center"> <small> From Monday the 11th of July to Friday the 15th of July 2011 </small> </p>
     <br/> <br/>
     <br/> <br/>
Line 46: Line 36:
     <br/> <br/>
     <br/> <br/>
-
   <h6 style="text-align :left"> Monday </h6>
+
   <h6 style="text-align :left"> Monday </h6> <HR>
-
 
+
     <br/>
     <br/>
 +
    <p style=" line-height : 1.5em">
-
    <p style = "line-height : 1.5em">
+
Visit of Centraco : a french nuclear waste treatment plant  <br/><br/><br/>
-
Additional minipreps of the same 6 parts. Digestion and ligation to obtain : RBS ( strong and weak ) + GFP, RBS + YFP. Culture of NM522 competent cells.
+
-
    </p>
+
 +
</p>
 +
<p style=" line-height : 1.5em"><FONT COLOR="red"> <b>Strain construction</b> </FONT> <br><br>
 +
 +
Start of 5mL cultures of 18A (Amp), 24E (Amp) and Curli(Cn). Incubation at 37°C <br/>
 +
Start of 50 mL cultures ( 50mL sterile LB, 500µL antibiotic, 100µL from the 5mL cultures ). Incubation at 37°C overnight.
 +
    </p>
 +
    <br/> <br/>
     <br/> <br/>
     <br/> <br/>
-
  <h6 style="text-align :left"> Tuesday </h6>
 
-
    <br/>
+
  <h6 style="text-align :left"> Tuesday </h6> <HR>
-
     <p style = "line-height : 1.5em">
+
    <br/>
-
Transformation of the ligations into NM522 using a CaCl2 chemical transformation.
+
   
 +
<div style="border:1px solid black;float:left;margin-left:3%; width : 180px">
 +
    <img src="https://static.igem.org/mediawiki/2011/f/f9/Electrophorese.jpg" width="180px"/>   
 +
</div>
 +
 
 +
     <p style=" line-height : 1.5em; margin-left : 30%; length: 300px">
 +
<br/> <br/>
 +
 
 +
<FONT COLOR="red"> <b>Strain construction</b> </FONT> <br><br>
 +
 
 +
<b>Miniprep</b> of the ligations from the previous week to check the insert : 5L+2L, 5L+24E, 2M+2L, 2M+24E, 2L-Tet, 24E-Tet<br/>
 +
4 clones are chosen for each ligation. <br/>
 +
<b>Digestion</b> and <b>electrophoresis</b> : no clone seemed to contain the insert. Decision to verify the digestion, ligation and transformation protocols. <br/><br/>
   </p>
   </p>
-
    <br/> <br/>   
+
  <br/>
 +
    <p style=" line-height : 1.5em">
 +
 +
<b>Midiprep</b> of 18A, 24E and curli parts.<br/>
 +
Nanodrop analysis : <br/>
 +
-18A : 16.7 ng/µL <br/>
 +
-Curli : 40.5 ng/µL <br/>
 +
-24E : 190.8 ng/µL <br/><br/><br/>
 +
 +
 +
</p>
 +
<p style = "line-height : 1.5em"><FONT COLOR="green"> <b>PCR and mutagenesis of rcn, csgBA, csgEFG</b> </FONT> <br><br>
 +
 +
The sequencing results were not enough good due to too high concentration of mutated plasmid. Resent of dillute sample.<br/> <br/>
 +
    </p> 
 +
 +
    <br/> <br/> 
 +
    <br/> <br/> 
   
   
-
<h6 style="text-align :left"> Wednesday </h6>
+
<h6 style="text-align :left"> Wednesday </h6> <HR>
-
    <div style="border:1px solid;float:right;margin-right:8%">
+
  <br/>
-
        <img src="https://static.igem.org/mediawiki/2011/d/d3/Notebook-tournage.jpg" width="80px">
+
  <p style=" line-height : 1.5em">
-
    </div>
+
-
    <br/>  
+
Another french newspaper <B>"Le progrès"</B> interviewed us.<br><br><br/>
-
<p style = "line-height : 1.5em; width : 600px">
+
</p>
-
Selection of individual transformed colonies and start of solid and liquid culture.
+
<p style=" line-height : 1.5em">
-
  </p>
+
<FONT COLOR="red"> <b>Strain construction</b> </FONT> <br><br>
-
    <p style = "line-height : 1.5em;width : 600px">
+
-
We shoot our "Cobalt Buster's Clip" which introduces, in a funny way, our team : students, instructors and advisors.  We dedicate the all afternoon to this shooting.
+
-
  </p>
+
-
    <br/> <br/>
+
Start of 5mL cultures of 22M, 2M, 2L, 5L, OmpR234 and RBS-GFP-LVA ( synthesized part with an unstable GFP )<br/><br/>
-
<h6 style="text-align :left"> Thursday </h6>
+
Start of 50mL cultures for the same parts.<br/><br/><br/>
-
    <br/>
+
 
-
    <p style = "line-height : 1.5em">
+
</p>
-
Extraction, digestion and electrophoresis of the selected transformed cultures of individual colonies : the transformation had failed.
+
<p style = "line-height : 1.5em"><FONT COLOR="green"> <b>PCR and mutagenesis of rcn, csgBA, csgEFG</b> </FONT> <br><br>
-
  </p>
+
 
 +
<b>Miniprep</b> of the clones with the mutated plasmid to get more plasmid for the next step. <br/><br/>
 +
 
 +
    </p>  
     <br/> <br/>
     <br/> <br/>
 +
    <br/> <br/>
-
<h6 style="text-align :left"> Friday </h6>
+
 
 +
<h6 style="text-align :left"> Thursday </h6> <HR>
 +
    <br/>
 +
<p style=" line-height : 1.5em">
 +
 +
French national day but... we worked.<br/><br/><br/>
 +
 +
 +
<FONT COLOR="red"> <b>Strain construction</b> </FONT> <br><br>
 +
 +
</p>
 +
 +
<p style=" line-height : 1.5em">
 +
<b>Midiprep</b> of 22M, 2M, 2L, 5L, OmpR234, RBS-GFP-LVA.
 +
    </p> 
     <br/> <br/>
     <br/> <br/>
     <br/> <br/>
     <br/> <br/>
 +
    <br/> <br/>
 +
    <p>
 +
              <a  href="https://2011.igem.org/Team:Lyon-INSA-ENS/Realisation/Week4"/><font color="grey"><b>Previous Week</b></font></a>
 +
              <a  style = "float : right"; href="https://2011.igem.org/Team:Lyon-INSA-ENS/Realisation/Week6"/><font color="grey"><b>Next Week</b></font></a>
 +
              <br/>
 +
    </p>
 +
    <br/> <br/>
</div>
</div>
</body>
</body>
</html>
</html>
 +
 +
{{Lyon-INSA-ENS/footer}}

Latest revision as of 23:35, 21 September 2011







Week 5


From Monday the 11th of July to Friday the 15th of July 2011







Monday

Visit of Centraco : a french nuclear waste treatment plant


Strain construction

Start of 5mL cultures of 18A (Amp), 24E (Amp) and Curli(Cn). Incubation at 37°C
Start of 50 mL cultures ( 50mL sterile LB, 500µL antibiotic, 100µL from the 5mL cultures ). Incubation at 37°C overnight.





Tuesday



Strain construction

Miniprep of the ligations from the previous week to check the insert : 5L+2L, 5L+24E, 2M+2L, 2M+24E, 2L-Tet, 24E-Tet
4 clones are chosen for each ligation.
Digestion and electrophoresis : no clone seemed to contain the insert. Decision to verify the digestion, ligation and transformation protocols.


Midiprep of 18A, 24E and curli parts.
Nanodrop analysis :
-18A : 16.7 ng/µL
-Curli : 40.5 ng/µL
-24E : 190.8 ng/µL


PCR and mutagenesis of rcn, csgBA, csgEFG

The sequencing results were not enough good due to too high concentration of mutated plasmid. Resent of dillute sample.





Wednesday

Another french newspaper "Le progrès" interviewed us.


Strain construction

Start of 5mL cultures of 22M, 2M, 2L, 5L, OmpR234 and RBS-GFP-LVA ( synthesized part with an unstable GFP )

Start of 50mL cultures for the same parts.


PCR and mutagenesis of rcn, csgBA, csgEFG

Miniprep of the clones with the mutated plasmid to get more plasmid for the next step.





Thursday

French national day but... we worked.


Strain construction

Midiprep of 22M, 2M, 2L, 5L, OmpR234, RBS-GFP-LVA.







Previous Week Next Week






ENS assystem Biomérieux INSA INSA
Retrieved from "http://2011.igem.org/Team:Lyon-INSA-ENS/Realisation/Week5"