Team:Wageningen UR/Project/ModelingProj1
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(→Modeling synchronized oscillations) |
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in which tau represents the time step. It can be seen that the function takes the history of the system into account, since the production of the proteins depend on the past concentration of internal AHL as in: [[File:Equations3_hasty_WUR.png]]. | in which tau represents the time step. It can be seen that the function takes the history of the system into account, since the production of the proteins depend on the past concentration of internal AHL as in: [[File:Equations3_hasty_WUR.png]]. | ||
- | For the first simulations, the same values for the parameters were used as in the cited paper and can be found in the [http://www.nature.com/nature/journal/v463/n7279/suppinfo/nature08753.html supplementary information]. To get graphs representing optimal oscillations, the matlab tool uses nested for-loops to vary the flow rate and cell density over a range of values. Figure 2 shows the GUI of the matlab tool created for this purpose. | + | For the first simulations, the same values for the parameters were used as in the cited paper and can be found in the [http://www.nature.com/nature/journal/v463/n7279/suppinfo/nature08753.html supplementary information]. To get graphs representing optimal oscillations, the matlab tool uses nested for-loops to vary the flow rate and cell density over a range of values. It allows the user to enter the range in which the variables should be varied. The tool then iterates over the values and plots graphs of all combinations possible for that range of values. Figure 2 shows an example output of the tool. |
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+ | <!-- Figure 2 shows the GUI of the matlab tool created for this purpose. | ||
[[File:Oscillation_GUI_WUR.png|center]] | [[File:Oscillation_GUI_WUR.png|center]] | ||
- | '''Fig.2:''' ''GUI of the matlab modeling tool created by team Wageningen UR'' | + | '''Fig.2:''' ''GUI of the matlab modeling tool created by team Wageningen UR'' |
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[[File:Example_output_graphs_WUR.png|700px|center]] | [[File:Example_output_graphs_WUR.png|700px|center]] | ||
- | '''Fig. | + | '''Fig.2:''' ''Variation of output graphs depending on the different starting conditions'' |
Revision as of 09:42, 17 September 2011