Team:Grenoble/Projet/Design

From 2011.igem.org

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The toggle switch offers the bacteria the capacity to choose between two pathways in function of their environment. Thanks to that our E.coli can activate one of two Quorum Sensing (*insérer un lien ici*) ways.
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The toggle switch offers the bacteria the capacity to choose between two pathways in function of their environment. Thanks to that our E.coli can activate one of two Quorum Sensing <!--(*insérer un lien ici*)--> ways.
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<h2 id="qs">Quorum Sensing</h2>
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<h2 id="qs">Quorum sensing explanation</h2>
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<h3>In a few words</h3>
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Quorum sensing is an important phase of physiological development of the bacteria. It’s the communication signal between bacteria carried by a signalling molecule. All bacteria can produce or detect the quorum sensing molecule. Quorum sensing involves a secreted molecule which allows the number of bacteria to be known and give a logical response to a high level of population. Frequently the Quorum sensing is the signal to stop the growth, activate the virulence state, or activate luminescence.
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<dt>Ultra violet lamp: </dt>
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There is a risk for the eyes and the skin, but the UV lamp is only used to take a picture of our gel after electrophoresis, so we are never directly exposed because there is a protective cover and we wear a mask that shields from UV.
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<dt>Centrifuge:</dt>
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The centrifuges have to be perfectly balanced. All the centrifuges in our lab have detectors that warn the operator in case of imbalance.
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The operation of the autoclave require a specific training and has only be performed by trained people.
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The quorum sensing (QS) detection is linked to his concentration in the medium, so when the concentration of bacteria is low few QS molecules diffuse and it does not activate the response. But when the bacteria become too abundant the QS concentration is higher and activates the response.
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  <td><p>Beginning of growth phase, cells are few, so the production of QS is very low, no response activity.</p></td>
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  <td><p>Middle Growth phase bacteria are many but not enough to activate QS response, the concentration in QS is not high enough.</p></td>
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  <td><p>In Stationary phase, bacteria are very concentrated so the production of QS is maximal and the ??? lack of space up the concentration of QS ??? . Both phenomena are sufficient to activate a response.</p></td>
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<h3>Biologically, what is happening ?</h3>
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The Quorum sensing system is composed of three elements: an enzyme, a secreted molecule and a receptor.
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A bacterium synthesises this Quorum sensing enzyme which in turn synthesizes the quorum sensing molecule. This molecule diffuses within and outside the cell (around 1mm/h), and can enter inside the issuing bacterium or any other bacteria in its neighbourhood. The QS molecule interacts with its receptor protein. The complex binds to DNA and activates or represses genes generating the appropriate response.
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Revision as of 07:39, 13 September 2011

Grenoble 2011, Mercuro-Coli iGEM


Design and principle

Toggle Switch

Quorum Sensing

Toggle switch explanation

In a few words

Our project is based on a toggle switch system. So we have to explain how it works. Basically it corresponds to an irreversible choice between two pathways depending on the environment. In reality, the reversibility is possible but very difficult to obtain because of the strength of the interactions and the stability of the system (defined by hysteresis * insérer un lien ici*).
2 pathways toggle switch

Genetically, what is happening ?

Contrary to us, bacteria can’t think or make voluntary choices. So how can they choose a pathway? Through our project, we are creating a genetic system which helps bacteria to take such a decision. For that, we exploit chemical components of the environment which influence the bacterial behaviour. By taking into account two proteins repressing each other’s expression (LacI and XR), we create the fundaments of a toggle system that can switch when using two inducers (IPTG and X) in the medium.

Suppose that initially the genes in the Toggle Switch are both expressed.

If the effect of LacI is dominant through the presence of a high level of IPTG, the bacteria will synthesise more XR and switch off the expression of lacI

The bacteria toggle to one side and totally block the expression of lacI.

We need to use very high level of the second inducer X to try to switch the toggle back because the active pathway creates an excess of XR, inhibiting lacI expression.

The amount of X would have to be so high as to relieve the inhibition of lacI expression and consequently turn off the other pathway.

The toggle switch offers the bacteria the capacity to choose between two pathways in function of their environment. Thanks to that our E.coli can activate one of two Quorum Sensing ways.

Quorum sensing explanation

In a few words

Quorum sensing is an important phase of physiological development of the bacteria. It’s the communication signal between bacteria carried by a signalling molecule. All bacteria can produce or detect the quorum sensing molecule. Quorum sensing involves a secreted molecule which allows the number of bacteria to be known and give a logical response to a high level of population. Frequently the Quorum sensing is the signal to stop the growth, activate the virulence state, or activate luminescence.

The quorum sensing (QS) detection is linked to his concentration in the medium, so when the concentration of bacteria is low few QS molecules diffuse and it does not activate the response. But when the bacteria become too abundant the QS concentration is higher and activates the response.

Beginning of growth phase, cells are few, so the production of QS is very low, no response activity.

Middle Growth phase bacteria are many but not enough to activate QS response, the concentration in QS is not high enough.

In Stationary phase, bacteria are very concentrated so the production of QS is maximal and the ??? lack of space up the concentration of QS ??? . Both phenomena are sufficient to activate a response.

Biologically, what is happening ?

The Quorum sensing system is composed of three elements: an enzyme, a secreted molecule and a receptor.

A bacterium synthesises this Quorum sensing enzyme which in turn synthesizes the quorum sensing molecule. This molecule diffuses within and outside the cell (around 1mm/h), and can enter inside the issuing bacterium or any other bacteria in its neighbourhood. The QS molecule interacts with its receptor protein. The complex binds to DNA and activates or represses genes generating the appropriate response.

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