######################################## # Program: needle # Rundate: Wed 17 Aug 2011 13:32:12 # Commandline: needle # -auto # -stdout # -asequence emboss_needle-I20110817-133211-0672-45106103-oy.asequence # -bsequence emboss_needle-I20110817-133211-0672-45106103-oy.bsequence # -datafile EDNAFULL # -gapopen 10.0 # -gapextend 0.5 # -endopen 10.0 # -endextend 0.5 # -aformat3 pair # -snucleotide1 # -snucleotide2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: EMBOSS_001 # 2: EMBOSS_001 # Matrix: EDNAFULL # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1012 # Identity: 614/1012 (60.7%) # Similarity: 614/1012 (60.7%) # Gaps: 391/1012 (38.6%) # Score: 3056.0 # # #======================================= EMBOSS_001 1 -------------------------------------------------- 0 EMBOSS_001 1 NNTTCGAGNANTAGTTGCACAACGGTCCCCTTATTGCCTGACAAGCTGAG 50 EMBOSS_001 1 -------------------------------------------------- 0 EMBOSS_001 51 GGCCACCCTTCTATCCCCACCGCGCGATCGCCATGATCACAAGTTTGTAC 100 EMBOSS_001 1 ---------------ATGTCCAGATTAGATAAAAGTAAAGTGATTAACAG 35 ||||||||||||||||||||||||||||||||||| EMBOSS_001 101 AAAAAAGTTGGCACCATGTCCAGATTAGATAAAAGTAAAGTGATTAACAG 150 EMBOSS_001 36 CGCATTAGAGCTGCTTAATGAGGTCGGAATCGAAGGTTTAACAACCCGTA 85 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 151 CGCATTAGAGCTGCTTAATGAGGTCGGAATCGAAGGTTTAACAACCCGTA 200 EMBOSS_001 86 AACTCGCCCAGAAGCTAGGTGTAGAGCAGCAAACATTGATGTGGCATGTA 135 |||||||||||||||||||||||||||||...||||||...||||||||| EMBOSS_001 201 AACTCGCCCAGAAGCTAGGTGTAGAGCAGNNNACATTGNNNTGGCATGTA 250 EMBOSS_001 136 AAAAATAAGCGGGCTTTGCTCGACGCCTTAGCCATTGAGATGTTAGATAG 185 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 251 AAAAATAAGCGGGCTTTGCTCGACGCCTTAGCCATTGAGATGTTAGATAG 300 EMBOSS_001 186 GCACCATACTCACTTTTGCCCTTTAGAAGGGGAAAGCTGGCAAGATTTTT 235 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 301 GCACCATACTCACTTTTGCCCTTTAGAAGGGGAAAGCTGGCAAGATTTTT 350 EMBOSS_001 236 TACGTAATAACGCTAAAAGTTTTAGATGTGCTTTACTAAGTCATCGCGAT 285 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 351 TACGTAATAACGCTAAAAGTTTTAGATGTGCTTTACTAAGTCATCGCGAT 400 EMBOSS_001 286 GGAGCAAAAGTACATTTAGGTACACGGCCTACAGAAAAACAGTATGAAAC 335 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 401 GGAGCAAAAGTACATTTAGGTACACGGCCTACAGAAAAACAGTATGAAAC 450 EMBOSS_001 336 TCTCGAAAATCAATTAGCCTTTTTATGCCAACAAGGTTTTTCACTAGAGA 385 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 451 TCTCGAAAATCAATTAGCCTTTTTATGCCAACAAGGTTTTTCACTAGAGA 500 EMBOSS_001 386 ATGCATTATATGCACTCAGCGCTGTGGGGCATTTTACTTTAGGTTGCGTA 435 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 501 ATGCATTATATGCACTCAGCGCTGTGGGGCATTTTACTTTAGGTTGCGTA 550 EMBOSS_001 436 TTGGAAGATCAAGAGCATCAAGTCGCTAAAGAAGAAAGGGAAACACCTAC 485 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 551 TTGGAAGATCAAGAGCATCAAGTCGCTAAAGAAGAAAGGGAAACACCTAC 600 EMBOSS_001 486 TACTGATAGTATGCCGCCATTATTACGACAAGCTATCGAATTATTTGATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 601 TACTGATAGTATGCCGCCATTATTACGACAAGCTATCGAATTATTTGATC 650 EMBOSS_001 536 ACCAAGGTGCAGAGCCAGCCTTCTTATTCGGCCTTGAATTGATCATATGC 585 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 651 ACCAAGGTGCAGAGCCAGCCTTCTTATTCGGCCTTGAATTGATCATATGC 700 EMBOSS_001 586 GGATTAGAAAAACAACTTAAATGTGAAAGTGGGTCT-------------- 621 |||||||||||||||||||.|||||||||||||||| EMBOSS_001 701 GGATTAGAAAAACAACTTANATGTGAAAGTGGGTCTTTGCCAACTTTCTT 750 EMBOSS_001 622 -------------------------------------------------- 621 EMBOSS_001 751 GTACAAAGTGGTGATAAACGAATTCGAGCTCATGTCTAAAGGTGAAGAAT 800 EMBOSS_001 622 -------------------------------------------------- 621 EMBOSS_001 801 TATTCACTGGTGTTGTCCCAATTTTGGTTGAATTAGATGGTGATGTTAAT 850 EMBOSS_001 622 -------------------------------------------------- 621 EMBOSS_001 851 GGTCACAAATTTTCTGTCTCCGGTGAAGGTGAAGGTGATGCTACTTACGG 900 EMBOSS_001 622 -------------------------------------------------- 621 EMBOSS_001 901 TAAATTGACCTTAAAATTTATTTGTACTACTGGTAAATTGCCAGTTCCAT 950 EMBOSS_001 622 -------------------------------------------------- 621 EMBOSS_001 951 GGCCAACCTTAGTCACTACTTTAACTTATGGTGTTCAATGTTTTTCTAGA 1000 EMBOSS_001 622 ------------ 621 EMBOSS_001 1001 TACCCAGATCAT 1012