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Team:UNIST Korea/project/modules
From 2011.igem.org
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<b>Figure 1 – Efficiency of the optical sensor was evaluated by following GFP expression in the presence and absence of light.</b> | <b>Figure 1 – Efficiency of the optical sensor was evaluated by following GFP expression in the presence and absence of light.</b> | ||
<center> <img src="https://static.igem.org/mediawiki/2011/c/c8/Picture2.jpg" width="700" height="300"/></center><br/> | <center> <img src="https://static.igem.org/mediawiki/2011/c/c8/Picture2.jpg" width="700" height="300"/></center><br/> | ||
| - | <b>Figure 2: The physical sensor engineered in <i>Chop. coli</i> helps it to differentiate between 30⁰C and 37⁰C when GFP was fused with the temperature dependent ribo-switch. </b><br/> | + | <b>Figure 2: The physical sensor engineered in <i>Chop. coli</i> helps it to differentiate between 30⁰C and 37⁰C when GFP was fused with the temperature dependent ribo-switch. </b><br/><br/> |
Being aware that fermentor is always maintained at 37⁰C, we assumed that the physical sensor would help <i>Chop. coli</i> to differentiate its environment. However, one cannot guarantee the presence of complete darkness in the fermentor. We hypothesized if the hybrid light receptor (hybrid of light receptor and osmo regulator) could also help determine the osmolarity. The fermentor is supposed to contain sugar at a higher concentration than the environment. As expected, the light receptor could sense high sugar concentration and behave similar to darkness in the presence of high sugar concentration. This would be an advantageous feature in <i>Chop. coli</i>. | Being aware that fermentor is always maintained at 37⁰C, we assumed that the physical sensor would help <i>Chop. coli</i> to differentiate its environment. However, one cannot guarantee the presence of complete darkness in the fermentor. We hypothesized if the hybrid light receptor (hybrid of light receptor and osmo regulator) could also help determine the osmolarity. The fermentor is supposed to contain sugar at a higher concentration than the environment. As expected, the light receptor could sense high sugar concentration and behave similar to darkness in the presence of high sugar concentration. This would be an advantageous feature in <i>Chop. coli</i>. | ||
| - | <center> <img src="https://static.igem.org/mediawiki/2011/2/2c/SKL12.png" width="800" height="300"/></center | + | <center> <img src="https://static.igem.org/mediawiki/2011/2/2c/SKL12.png" width="800" height="300"/></center><br/> |
| - | <b>Figure 3. The hybrid light receptor and osmo-regulator suffers from cross talk. Response to darkness was similar to its response to high concentration of sugar. This would be advantageous for <i>Chop. coli</i> as either high sugar concentration or darkness present in the fermentor will keep the cells from lysis.</b><br/> | + | <b>Figure 3. The hybrid light receptor and osmo-regulator suffers from cross talk. Response to darkness was similar to its response to high concentration of sugar. This would be advantageous for <i>Chop. coli</i> as either high sugar concentration or darkness present in the fermentor will keep the cells from lysis.</b><br/><br/> |
| - | <center><b><font size=" | + | <center><b><font size="6"><font color="blue"><i>Chop. coli</i> can efficiently sense its environment</center></b></font></font><br/> |
<table style="background-color:#F5F5DC;"><table width="100%" border="0"> | <table style="background-color:#F5F5DC;"><table width="100%" border="0"> | ||
<tr> | <tr> | ||
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<b><font size="4"><font color="blue">INFORMATION PROCESSING MODULE</b></font></font><br/><br/> | <b><font size="4"><font color="blue">INFORMATION PROCESSING MODULE</b></font></font><br/><br/> | ||
After sensing the environment through optical and physical sensor, Chop. coli should process the information. We introduced two different processor system: fim inversion system and cI control system.<br/> | After sensing the environment through optical and physical sensor, Chop. coli should process the information. We introduced two different processor system: fim inversion system and cI control system.<br/> | ||
| - | • fim inversion system | + | • <b><font color="blue">fim inversion system</font><br/></b> |
| - | Even though we were able to successfully construct and regulate fim inversion system using light, we were not able to control the basal fimE expression leading to the failure of this construct. | + | Even though we were able to successfully construct and regulate fim inversion system using light, we were not able to control the basal fimE expression leading to the failure of this construct.<br/> |
| - | • cI control system | + | • <b><font color="blue">cI control system</font><br/></b> |
| - | As expected, the cI system was able to provide an efficient control of gene expression with light despite a background expression. To reduce the background further we integrated the cI expressed from Pompc into the chromosome of E. coli. Chromosomally encoded cI reduced the background expression further (Figure 4). | + | As expected, the cI system was able to provide an efficient control of gene expression with light despite a background expression. To reduce the background further we integrated the cI expressed from Pompc into the chromosome of E. coli. Chromosomally encoded cI reduced the background expression further (Figure 4).<br/> |
| + | <center> <img src="https://static.igem.org/mediawiki/2011/6/60/SKL13.png" width="500" height="300"/></center><br/> | ||
</body> | </body> | ||
</HTML> | </HTML> | ||
Revision as of 11:22, 4 October 2011
RESULTS
Our project aims at designing E. coli to sense its environment and act accordingly. In order to achieve this, we have categorized our projects into three main groups.
| Sensory Module | Processing Module | Lysis Module |
|---|
SENSORY MODULE
We have engineered two different sensors into E. coli. The first sensor is an optical sensor that detects the light present in the environment. We used Cph8, hybrid light receptor, as a optical sensor (Fig 1) [1]. The second sensor is to a physical sensor that would sense the temperature of the environment. We used the temperature dependent ribo-switch as a physical sensor to detect the temperature of the environment (Fig 2) [2].
Figure 2: The physical sensor engineered in Chop. coli helps it to differentiate between 30⁰C and 37⁰C when GFP was fused with the temperature dependent ribo-switch.
Being aware that fermentor is always maintained at 37⁰C, we assumed that the physical sensor would help Chop. coli to differentiate its environment. However, one cannot guarantee the presence of complete darkness in the fermentor. We hypothesized if the hybrid light receptor (hybrid of light receptor and osmo regulator) could also help determine the osmolarity. The fermentor is supposed to contain sugar at a higher concentration than the environment. As expected, the light receptor could sense high sugar concentration and behave similar to darkness in the presence of high sugar concentration. This would be an advantageous feature in Chop. coli.
Figure 3. The hybrid light receptor and osmo-regulator suffers from cross talk. Response to darkness was similar to its response to high concentration of sugar. This would be advantageous for Chop. coli as either high sugar concentration or darkness present in the fermentor will keep the cells from lysis.
| Temperature | Light | Osmolality |
|---|
INFORMATION PROCESSING MODULE
After sensing the environment through optical and physical sensor, Chop. coli should process the information. We introduced two different processor system: fim inversion system and cI control system.
• fim inversion system
Even though we were able to successfully construct and regulate fim inversion system using light, we were not able to control the basal fimE expression leading to the failure of this construct.
• cI control system
As expected, the cI system was able to provide an efficient control of gene expression with light despite a background expression. To reduce the background further we integrated the cI expressed from Pompc into the chromosome of E. coli. Chromosomally encoded cI reduced the background expression further (Figure 4).
