Team:Northwestern/Overview

From 2011.igem.org

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<DIV style="font-size:20px">The Theory</DIV><DIV style="font:15px Helvetica;">
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Virulence factors produced by Pseudomonas aeruginosa are controlled by a natural regulatory, hierarchical network consisting of two main systems: the las system and the rhl system. The main components of these systems are the receptor proteins lasR and rhlR, and the autoinducers 3-oxo-C12-HSL (PAI-1) and C4-HSL (PAI-2). Upon binding to the induced promoters LasP and RhlP, the LasR/PAI-1 and RhlR/PAI-2 dimers act as transcriptional regulators that enhance the expression of the proceeding genetic sequence.  This transcriptional regulatory mechanism, which known specifically to respond to cell density (via autoinducer/R-proteins) will be employed in our construct for Pseudomonas aeruginosa detection.
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<DIV style="font-size:20px">Components of the Construct</DIV><DIV style="font:15px Helvetica;">
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There are three vital components to our construct, the autoinducer, the receptor protein, and the reporter. The autoinducer will be supplied by P. aeruginosa, which needs to be detected by the system. The receptor proteins need to be produced by the E. coli. Finally, the reporting sequence has to be paired to the induced promoters (autoinducer/r-protein specific). The three components are depicted below in Figure 1.
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<caption align="bottom"></html>'''Figure 1:''' The 3 components of the sensing construct in ''E. coli''.<html></caption>
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<tr><td><img src="https://static.igem.org/mediawiki/2011/1/13/General_idea.jpg" style="opacity:1;filter:alpha(opacity=100);" width="700px" height="140px" alt="fig1"/ border="0"></td></tr>
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[[Image:NU_project_introduction_fig1.png|right|frame|'''Figure 1:''' Cell-to-cell signaling system in ''P. aeruginosa'' [http://www.cdc.gov/ncidod/eid/vol4no4/vandelden.htm]]]
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<DIV style="font-size:20px">Construct Design</DIV><DIV style="font:15px Helvetica;">
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When combined, the three components of the system facilitate the detection of P. aeruginosa as depicted in Figure 2. The autoinducers directly influence the level of reporter expression; however, they are traditionally produced at basal levels by P. aeruginosa which would take a while to detect. Therefore, to enhance the sensitivity of the construct to the autoinducers, the R-protein synthase sequence is coupled with a constitutive promoter. Constitutive expression of the R-protein synthase will eventually saturate the cell, and enhance the detection of P. aeruginosa. The induced promoter and reporter sequence is designed upstream of the constitutive promoter and R-protein synthase construct.
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Virulence factors produced by ''Pseudomonas aeruginosa'' are controlled by a natural regulatory, hierarchical network consisting of two main systems: the las system and the rhl system. The main components of these systems are the receptor proteins (lasR and rhlR) and the autoinducers (3-oxo-C12-HSL and C4-HSL). The formation of a lasR/3-oxo-C12-HSL complex activates the transcription of several genes, notably rhlR as well as others responsible for biofilm differentiation. The binding of the C4-HSL autoinducer to rhlR further activates genes including the rhlAB operon, which encodes enzymes for the production of rhamnolipids that modulate the motility of ''P. aeruginosa''. Both lasR and rhlR are subject to positive feedback autoregulation through autoinducers. Figure 1 details the existing quorum sensing system inherent to ''P. aeruginosa''.
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Our project goal is to utilize several genes from this existing system, specifically to introduce las and rhl receptors into ''E. coli'' in order to sense the presence of 3-oxo-C12-HSL and/or C4-HSL, thereby detecting ''P. Aeruginosa''. Figure 2 illustrates the genetic circuit that we are attempting to incorporate into ''E. coli''.  
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<caption align="bottom"></html>'''Figure 2:''' The ''P. aeruginosa'' detecting construct design.<html></caption>
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[[Image:NU_project_introduction_fig2.png|600px|center]]
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<tr><td><img src="https://static.igem.org/mediawiki/2011/3/37/Construct_design.jpg" style="opacity:1;filter:alpha(opacity=100);" width="600px" height="400px" alt="fig1"/ border="0"></td></tr>
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'''Figure 2:''' Genetic circuit for ''E. coli'', incorporating several elements from ''P. aeruginosa''.
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Revision as of 23:11, 25 September 2011

RETURN TO IGEM 2010



The Theory

Virulence factors produced by Pseudomonas aeruginosa are controlled by a natural regulatory, hierarchical network consisting of two main systems: the las system and the rhl system. The main components of these systems are the receptor proteins lasR and rhlR, and the autoinducers 3-oxo-C12-HSL (PAI-1) and C4-HSL (PAI-2). Upon binding to the induced promoters LasP and RhlP, the LasR/PAI-1 and RhlR/PAI-2 dimers act as transcriptional regulators that enhance the expression of the proceeding genetic sequence. This transcriptional regulatory mechanism, which known specifically to respond to cell density (via autoinducer/R-proteins) will be employed in our construct for Pseudomonas aeruginosa detection.


Components of the Construct

There are three vital components to our construct, the autoinducer, the receptor protein, and the reporter. The autoinducer will be supplied by P. aeruginosa, which needs to be detected by the system. The receptor proteins need to be produced by the E. coli. Finally, the reporting sequence has to be paired to the induced promoters (autoinducer/r-protein specific). The three components are depicted below in Figure 1.


Figure 1: The 3 components of the sensing construct in E. coli.
fig1


Construct Design

When combined, the three components of the system facilitate the detection of P. aeruginosa as depicted in Figure 2. The autoinducers directly influence the level of reporter expression; however, they are traditionally produced at basal levels by P. aeruginosa which would take a while to detect. Therefore, to enhance the sensitivity of the construct to the autoinducers, the R-protein synthase sequence is coupled with a constitutive promoter. Constitutive expression of the R-protein synthase will eventually saturate the cell, and enhance the detection of P. aeruginosa. The induced promoter and reporter sequence is designed upstream of the constitutive promoter and R-protein synthase construct.



Figure 2: The P. aeruginosa detecting construct design.
fig1

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