http://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&feed=atom&action=historyTeam:METU-BIN Ankara/Collaborations - Revision history2024-03-29T10:48:11ZRevision history for this page on the wikiMediaWiki 1.16.0http://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&diff=262860&oldid=prevGngr at 22:56, 21 November 20112011-11-21T22:56:09Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 22:56, 21 November 2011</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 86:</td>
<td colspan="2" class="diff-lineno">Line 86:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="m4b margin"><h6>See our software, it's online!</h6></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="m4b margin"><h6>See our software, it's online!</h6></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><a href="<del class="diffchange diffchange-inline">https</del>://<del class="diffchange diffchange-inline">2011</del>.<del class="diffchange diffchange-inline">igem</del>.<del class="diffchange diffchange-inline">org/Team</del>:<del class="diffchange diffchange-inline">METU-BIN_Ankara</del>/<del class="diffchange diffchange-inline">M4B</del>" target="_blank"><img style="width: 276px;margin:0;" src="https://static.igem.org/mediawiki/2011/8/89/M4bGUI.png" /></a>M4B: Mining for BioBricks. It's a miner that goes over all the parts and finds the possible devices for you! <a href="<del class="diffchange diffchange-inline">https</del>://<del class="diffchange diffchange-inline">2011</del>.<del class="diffchange diffchange-inline">igem</del>.<del class="diffchange diffchange-inline">org/Team</del>:<del class="diffchange diffchange-inline">METU-BIN_Ankara</del>/<del class="diffchange diffchange-inline">M4B</del>" target="_blank">Click to see!</a></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><a href="<ins class="diffchange diffchange-inline">http</ins>://<ins class="diffchange diffchange-inline">dayhoff</ins>.<ins class="diffchange diffchange-inline">ii</ins>.<ins class="diffchange diffchange-inline">metu.edu.tr</ins>:<ins class="diffchange diffchange-inline">8080</ins>/<ins class="diffchange diffchange-inline">m4b</ins>" target="_blank"><img style="width: 276px;margin:0;" src="https://static.igem.org/mediawiki/2011/8/89/M4bGUI.png" /></a>M4B: Mining for BioBricks. It's a miner that goes over all the parts and finds the possible devices for you! <a href="<ins class="diffchange diffchange-inline">http</ins>://<ins class="diffchange diffchange-inline">dayhoff</ins>.<ins class="diffchange diffchange-inline">ii</ins>.<ins class="diffchange diffchange-inline">metu.edu.tr</ins>:<ins class="diffchange diffchange-inline">8080</ins>/<ins class="diffchange diffchange-inline">m4b</ins>" target="_blank">Click to see!</a></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="clearfixed"></div></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="clearfixed"></div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></div></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></div></div></td></tr>
</table>Gngrhttp://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&diff=248207&oldid=prevGngr at 17:45, 27 October 20112011-10-27T17:45:57Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 17:45, 27 October 2011</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 86:</td>
<td colspan="2" class="diff-lineno">Line 86:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="m4b margin"><h6>See our software, it's online!</h6></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="m4b margin"><h6>See our software, it's online!</h6></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><a href="<del class="diffchange diffchange-inline">http</del>://<del class="diffchange diffchange-inline">dayhoff</del>.<del class="diffchange diffchange-inline">ii</del>.<del class="diffchange diffchange-inline">metu.edu.tr</del>:<del class="diffchange diffchange-inline">8080/m4b</del>/" target="_blank"><img src="https://static.igem.org/mediawiki/2011/<del class="diffchange diffchange-inline">3</del>/<del class="diffchange diffchange-inline">31</del>/<del class="diffchange diffchange-inline">M4b_logo</del>.png" /></a>M4B: Mining for BioBricks. It's a miner that goes over all the parts and finds the possible devices for you! <a href="<del class="diffchange diffchange-inline">http</del>://<del class="diffchange diffchange-inline">dayhoff</del>.<del class="diffchange diffchange-inline">ii</del>.<del class="diffchange diffchange-inline">metu.edu.tr</del>:<del class="diffchange diffchange-inline">8080/m4b</del>/" target="_blank">Click <del class="diffchange diffchange-inline">on here</del></a> <del class="diffchange diffchange-inline">or the logo!</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><a href="<ins class="diffchange diffchange-inline">https</ins>://<ins class="diffchange diffchange-inline">2011</ins>.<ins class="diffchange diffchange-inline">igem</ins>.<ins class="diffchange diffchange-inline">org/Team</ins>:<ins class="diffchange diffchange-inline">METU-BIN_Ankara</ins>/<ins class="diffchange diffchange-inline">M4B</ins>" target="_blank"><img <ins class="diffchange diffchange-inline">style="width: 276px;margin:0;" </ins>src="https://static.igem.org/mediawiki/2011/<ins class="diffchange diffchange-inline">8</ins>/<ins class="diffchange diffchange-inline">89</ins>/<ins class="diffchange diffchange-inline">M4bGUI</ins>.png" /></a>M4B: Mining for BioBricks. It's a miner that goes over all the parts and finds the possible devices for you! <a href="<ins class="diffchange diffchange-inline">https</ins>://<ins class="diffchange diffchange-inline">2011</ins>.<ins class="diffchange diffchange-inline">igem</ins>.<ins class="diffchange diffchange-inline">org/Team</ins>:<ins class="diffchange diffchange-inline">METU-BIN_Ankara</ins>/<ins class="diffchange diffchange-inline">M4B</ins>" target="_blank">Click <ins class="diffchange diffchange-inline">to see!</ins></a></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="clearfixed"></div></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="clearfixed"></div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></div></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></div></div></td></tr>
</table>Gngrhttp://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&diff=163882&oldid=prevGngr at 00:11, 22 September 20112011-09-22T00:11:09Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 00:11, 22 September 2011</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 23:</td>
<td colspan="2" class="diff-lineno">Line 23:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Algorithm">Algorithm</a></li></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Algorithm">Algorithm</a></li></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Construction_of_Relational_Database">Construction of Relational Database</a></li></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Construction_of_Relational_Database">Construction of Relational Database</a></li></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Scoring">Scoring</a></li></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Scoring"><ins class="diffchange diffchange-inline">EDGE-SUM </ins>Scoring</a></li></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Results">Results</a></li></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Results">Results</a></li></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#System_Specifications">System Specifications</a></li></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#System_Specifications">System Specifications</a></li></div></td></tr>
</table>Gngrhttp://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&diff=160703&oldid=prevGngr at 21:36, 21 September 20112011-09-21T21:36:29Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 21:36, 21 September 2011</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 25:</td>
<td colspan="2" class="diff-lineno">Line 25:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Scoring">Scoring</a></li></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Scoring">Scoring</a></li></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Results">Results</a></li></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#Results">Results</a></li></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"> <li><a href="https://2011.igem.org/Team:METU-BIN_Ankara/Project#System_Specifications">System Specifications</a></li></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </ul></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </ul></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></li></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></li></div></td></tr>
</table>Gngrhttp://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&diff=160325&oldid=prevGngr at 21:14, 21 September 20112011-09-21T21:14:40Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 21:14, 21 September 2011</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 57:</td>
<td colspan="2" class="diff-lineno">Line 57:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="p">"We are constructing a device that is induced by IPTG and that gives lysis enzymes and GFP as the outputs because, in order to elute methanol we need to kill our modified cells that convert ambient methane to methanol and the reason why we want GFP as one output is to be sure that it works. Our modelled device has promoter induced by IPTG, RBS, gene coding GFP and lysis cassette ending with cell death and we are glad to have it and it's working how we expected. So then, we use M4B to see that if it finds the exact device or the device that can do the same job. Since the software has only one place for output, we queried IPTG as an input and GFP as an output on the software and got corresponding 117 results. These results contain devices exactly what we have one for the same operation. However, we couldn't find the lysozyme output for the IPTG input in the software."</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="p">"We are constructing a device that is induced by IPTG and that gives lysis enzymes and GFP as the outputs because, in order to elute methanol we need to kill our modified cells that convert ambient methane to methanol and the reason why we want GFP as one output is to be sure that it works. Our modelled device has promoter induced by IPTG, RBS, gene coding GFP and lysis cassette ending with cell death and we are glad to have it and it's working how we expected. So then, we use M4B to see that if it finds the exact device or the device that can do the same job. Since the software has only one place for output, we queried IPTG as an input and GFP as an output on the software and got corresponding 117 results. These results contain devices exactly what we have one for the same operation. However, we couldn't find the lysozyme output for the IPTG input in the software."</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p class="p">We are pleased <del class="diffchange diffchange-inline">and happy </del>to hear the feedback of METU-Ankara Team and it's good the know that their first query on our software was successful. As for the second one, we haven't included DNA, RNA and tags yet. It's one of our future plans and next year, it'll be done. Furthermore, queries with multiple inputs or outputs will be available. So, in one operation, they will be able to get what they want. <a href="https://2011.igem.org/Team:METU-BIN_Ankara/NextVersion">See our future plans on the next version</a>.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p class="p">We are pleased to hear the feedback of METU-Ankara Team and it's good the know that their first query on our software was successful. As for the second one, we haven't included DNA, RNA and tags yet. It's one of our future plans and next year, it'll be done. Furthermore, queries with multiple inputs or outputs will be available. So, in one operation, they will be able to get what they want. <a href="https://2011.igem.org/Team:METU-BIN_Ankara/NextVersion">See our future plans on the next version</a>.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h3>Uppsala-Sweden</h3></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h3>Uppsala-Sweden</h3></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>We <del class="diffchange diffchange-inline">are </del>also <del class="diffchange diffchange-inline">collaborating </del>with Uppsala-Sweden <del class="diffchange diffchange-inline">Team</del>. <del class="diffchange diffchange-inline">They're going </del>to <del class="diffchange diffchange-inline">utilize </del>our software and <del class="diffchange diffchange-inline">send their </del>results. <del class="diffchange diffchange-inline">Then</del>, it'll be <del class="diffchange diffchange-inline">posted </del>on this page.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>We also <ins class="diffchange diffchange-inline">collaborated </ins>with <ins class="diffchange diffchange-inline">the team </ins>Uppsala-Sweden. <ins class="diffchange diffchange-inline">Below, you can see their feedback on our project, the software: M4B: Mining for BİoBrick.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p class="p">"The METU-BIN_Ankara team provided us their software which they developed for their project </ins>to <ins class="diffchange diffchange-inline">test it if we can use for </ins>our <ins class="diffchange diffchange-inline">Project. We examined the </ins>software <ins class="diffchange diffchange-inline">by searching the parts that have been used during our Project.We used red,blue </ins>and <ins class="diffchange diffchange-inline">green lights as input which activate red sensor(cph8), green sensor(ccaS) and blue sensor(YF1). We are aiming to get three colours as output which are blue output(amilCP), red output(mCherry) and green/yellow output(amilGFP).</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p class="p">However, we got no result for our specific input - output relations but, the software has some of the inputs and outputs.</p></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p class="p">This software is very helpful to search the parts and check if the parts are in the standart registry database and decide which parts work effectively with eachother as well.That provides an easy start to constract the parts and give more efficient </ins>results.<ins class="diffchange diffchange-inline"></p></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p class="p">We appreciate METU-BIN_Ankara team to create that software and believe that it will be a very helpful software which will solve the problems that we or another teams faced up in the beginning.</p></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p class="p">The software can be improved further by adding more parameters."</p></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p class="p">We are happy to see that they use and have positive expressions on our software. As we got the information about their project, they are adding some of the bioparts of their modified device newly into the Registry. Because of this, and since our software has 2011 spring distribution in its database</ins>, it<ins class="diffchange diffchange-inline">'s normal to get no results for their specific device. However, when they</ins>'ll <ins class="diffchange diffchange-inline">add them and our database is updated, finally our software will </ins>be <ins class="diffchange diffchange-inline">able to find that specific result.</p></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p class="p">At the same time, our team has given a feedback on the Biosafety document of the team Uppsala-Sweden, you can read it <a href="https://2011.igem.org/Team:Uppsala-Sweden/Feedback" target="_blank"></ins>on this page<ins class="diffchange diffchange-inline"></a></ins>.<ins class="diffchange diffchange-inline"></p></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></div></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></div></div></td></tr>
</table>Gngrhttp://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&diff=155227&oldid=prevGngr at 16:17, 21 September 20112011-09-21T16:17:34Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 16:17, 21 September 2011</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 53:</td>
<td colspan="2" class="diff-lineno">Line 53:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="p">Their feedback is the following.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="p">Their feedback is the following.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><span style="width:250px;height:auto;float:left;margin:0 10px 0 0;"><a href="https://static.igem.org/mediawiki/2011/b/bf/Metu-ankara-ss.png" target="_blank"><img style="border:1px solid #ccc;width:250px;height:auto;" src="<del class="diffchange diffchange-inline">http</del>://<del class="diffchange diffchange-inline">www</del>.<del class="diffchange diffchange-inline">metu</del>.<del class="diffchange diffchange-inline">edu.tr</del>/<del class="diffchange diffchange-inline">~e172018</del>/<del class="diffchange diffchange-inline">images</del>/<del class="diffchange diffchange-inline">metu-bin</del>/<del class="diffchange diffchange-inline">metu</del>-ankara-ss.png" /></a><br><small style="color:#ccc;">Click on the image to view larger size.</small></span></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><span style="width:250px;height:auto;float:left;margin:0 10px 0 0;"><a href="https://static.igem.org/mediawiki/2011/b/bf/Metu-ankara-ss.png" target="_blank"><img style="border:1px solid #ccc;width:250px;height:auto;" src="<ins class="diffchange diffchange-inline">https</ins>://<ins class="diffchange diffchange-inline">static</ins>.<ins class="diffchange diffchange-inline">igem</ins>.<ins class="diffchange diffchange-inline">org/mediawiki</ins>/<ins class="diffchange diffchange-inline">2011</ins>/<ins class="diffchange diffchange-inline">b</ins>/<ins class="diffchange diffchange-inline">bf</ins>/<ins class="diffchange diffchange-inline">Metu</ins>-ankara-ss.png" /></a><br><small style="color:#ccc;">Click on the image to view larger size.</small></span></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="p">"We are constructing a device that is induced by IPTG and that gives lysis enzymes and GFP as the outputs because, in order to elute methanol we need to kill our modified cells that convert ambient methane to methanol and the reason why we want GFP as one output is to be sure that it works. Our modelled device has promoter induced by IPTG, RBS, gene coding GFP and lysis cassette ending with cell death and we are glad to have it and it's working how we expected. So then, we use M4B to see that if it finds the exact device or the device that can do the same job. Since the software has only one place for output, we queried IPTG as an input and GFP as an output on the software and got corresponding 117 results. These results contain devices exactly what we have one for the same operation. However, we couldn't find the lysozyme output for the IPTG input in the software."</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="p">"We are constructing a device that is induced by IPTG and that gives lysis enzymes and GFP as the outputs because, in order to elute methanol we need to kill our modified cells that convert ambient methane to methanol and the reason why we want GFP as one output is to be sure that it works. Our modelled device has promoter induced by IPTG, RBS, gene coding GFP and lysis cassette ending with cell death and we are glad to have it and it's working how we expected. So then, we use M4B to see that if it finds the exact device or the device that can do the same job. Since the software has only one place for output, we queried IPTG as an input and GFP as an output on the software and got corresponding 117 results. These results contain devices exactly what we have one for the same operation. However, we couldn't find the lysozyme output for the IPTG input in the software."</p></div></td></tr>
</table>Gngrhttp://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&diff=155133&oldid=prevGngr at 16:11, 21 September 20112011-09-21T16:11:03Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 16:11, 21 September 2011</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 53:</td>
<td colspan="2" class="diff-lineno">Line 53:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="p">Their feedback is the following.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="p">Their feedback is the following.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><span style="width:250px;height:auto;float:left;margin:0 10px 0 0;"><a href="<del class="diffchange diffchange-inline">http</del>://<del class="diffchange diffchange-inline">www</del>.<del class="diffchange diffchange-inline">metu</del>.<del class="diffchange diffchange-inline">edu.tr</del>/<del class="diffchange diffchange-inline">~e172018</del>/<del class="diffchange diffchange-inline">images</del>/<del class="diffchange diffchange-inline">metu-bin</del>/<del class="diffchange diffchange-inline">metu</del>-ankara-ss.png" target="_blank"><img style="border:1px solid #ccc;width:250px;height:auto;" src="http://www.metu.edu.tr/~e172018/images/metu-bin/metu-ankara-ss.png" /></a><br><small style="color:#ccc;">Click on the image to view larger size.</small></span></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><span style="width:250px;height:auto;float:left;margin:0 10px 0 0;"><a href="<ins class="diffchange diffchange-inline">https</ins>://<ins class="diffchange diffchange-inline">static</ins>.<ins class="diffchange diffchange-inline">igem</ins>.<ins class="diffchange diffchange-inline">org/mediawiki</ins>/<ins class="diffchange diffchange-inline">2011</ins>/<ins class="diffchange diffchange-inline">b</ins>/<ins class="diffchange diffchange-inline">bf</ins>/<ins class="diffchange diffchange-inline">Metu</ins>-ankara-ss.png" target="_blank"><img style="border:1px solid #ccc;width:250px;height:auto;" src="http://www.metu.edu.tr/~e172018/images/metu-bin/metu-ankara-ss.png" /></a><br><small style="color:#ccc;">Click on the image to view larger size.</small></span></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="p">"We are constructing a device that is induced by IPTG and that gives lysis enzymes and GFP as the outputs because, in order to elute methanol we need to kill our modified cells that convert ambient methane to methanol and the reason why we want GFP as one output is to be sure that it works. Our modelled device has promoter induced by IPTG, RBS, gene coding GFP and lysis cassette ending with cell death and we are glad to have it and it's working how we expected. So then, we use M4B to see that if it finds the exact device or the device that can do the same job. Since the software has only one place for output, we queried IPTG as an input and GFP as an output on the software and got corresponding 117 results. These results contain devices exactly what we have one for the same operation. However, we couldn't find the lysozyme output for the IPTG input in the software."</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="p">"We are constructing a device that is induced by IPTG and that gives lysis enzymes and GFP as the outputs because, in order to elute methanol we need to kill our modified cells that convert ambient methane to methanol and the reason why we want GFP as one output is to be sure that it works. Our modelled device has promoter induced by IPTG, RBS, gene coding GFP and lysis cassette ending with cell death and we are glad to have it and it's working how we expected. So then, we use M4B to see that if it finds the exact device or the device that can do the same job. Since the software has only one place for output, we queried IPTG as an input and GFP as an output on the software and got corresponding 117 results. These results contain devices exactly what we have one for the same operation. However, we couldn't find the lysozyme output for the IPTG input in the software."</p></div></td></tr>
</table>Gngrhttp://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&diff=154848&oldid=prevGngr at 15:51, 21 September 20112011-09-21T15:51:51Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 15:51, 21 September 2011</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 9:</td>
<td colspan="2" class="diff-lineno">Line 9:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="igem"><a href="https://2011.igem.org/Main_Page" target="_blank"><img src="https://static.igem.org/mediawiki/2011/4/4b/Igem_2011_logo.png" /></a></div></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="igem"><a href="https://2011.igem.org/Main_Page" target="_blank"><img src="https://static.igem.org/mediawiki/2011/4/4b/Igem_2011_logo.png" /></a></div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="act_header"><h1><span>METU-BIN iGEM Software Team<span>Project: <span>Mining for BioBricks</span></span></span></h1></div></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="act_header"><h1><span>METU-BIN iGEM Software Team<span>Project: <span>Mining for BioBricks</span></span></span></h1></div></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><div class="metu-bin"><a href="https://2011.igem.org/Team:METU-BIN_Ankara" target="_blank"><img src="<del class="diffchange diffchange-inline">http</del>://<del class="diffchange diffchange-inline">www</del>.<del class="diffchange diffchange-inline">metu</del>.<del class="diffchange diffchange-inline">edu.tr</del>/<del class="diffchange diffchange-inline">~e172018</del>/<del class="diffchange diffchange-inline">images</del>/<del class="diffchange diffchange-inline">metu</del>-bin_logo.png" /></a></div></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><div class="metu-bin"><a href="https://2011.igem.org/Team:METU-BIN_Ankara" target="_blank"><img src="<ins class="diffchange diffchange-inline">https</ins>://<ins class="diffchange diffchange-inline">static</ins>.<ins class="diffchange diffchange-inline">igem</ins>.<ins class="diffchange diffchange-inline">org/mediawiki/2011</ins>/<ins class="diffchange diffchange-inline">d</ins>/<ins class="diffchange diffchange-inline">d6</ins>/<ins class="diffchange diffchange-inline">Metu</ins>-bin_logo.png" /></a></div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="clearfixed"></div></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><div class="clearfixed"></div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></div></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></div></div></td></tr>
</table>Gngrhttp://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&diff=154750&oldid=prevGngr at 15:46, 21 September 20112011-09-21T15:46:45Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 15:46, 21 September 2011</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 2:</td>
<td colspan="2" class="diff-lineno">Line 2:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><head></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><head></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><meta http-equiv="Content-Type" content="text/html; charset=utf-8" /></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><meta http-equiv="Content-Type" content="text/html; charset=utf-8" /></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><script src="http://widgets.twimg.com/j/2/widget.js"></script></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><link href="http://dayhoff.ii.metu.edu.tr:8080/m4b/style.css" rel="stylesheet" type="text/css" /></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><link href="http://dayhoff.ii.metu.edu.tr:8080/m4b/style.css" rel="stylesheet" type="text/css" /></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></head></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></head></div></td></tr>
</table>Gngrhttp://2011.igem.org/wiki/index.php?title=Team:METU-BIN_Ankara/Collaborations&diff=154697&oldid=prevGngr at 15:43, 21 September 20112011-09-21T15:43:44Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 15:43, 21 September 2011</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 2:</td>
<td colspan="2" class="diff-lineno">Line 2:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><head></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><head></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><meta http-equiv="Content-Type" content="text/html; charset=utf-8" /></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><meta http-equiv="Content-Type" content="text/html; charset=utf-8" /></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><link href="http://<del class="diffchange diffchange-inline">www</del>.metu.edu.tr/<del class="diffchange diffchange-inline">~e172018</del>/<del class="diffchange diffchange-inline">metu-bin-</del>style.css" rel="stylesheet" type="text/css" /></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><script src="http://widgets.twimg.com/j/2/widget.js"></script></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><link href="http://<ins class="diffchange diffchange-inline">dayhoff.ii</ins>.metu.edu.tr<ins class="diffchange diffchange-inline">:8080</ins>/<ins class="diffchange diffchange-inline">m4b</ins>/style.css" rel="stylesheet" type="text/css" /></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></head></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></head></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
</table>Gngr