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Team:Harvard/ZF Binding Site Finder
From 2011.igem.org
(Difference between revisions)
| Line 65: | Line 65: | ||
// clearForm function | // clearForm function | ||
| - | $(".graytext"). | + | $(".graytext").focus(function() { |
if($(this)[0].defaultValue==$(this).val()) | if($(this)[0].defaultValue==$(this).val()) | ||
| Line 74: | Line 74: | ||
}); | }); | ||
| + | |||
| + | // reverse complement function | ||
| + | function reverseComplement(sequence) | ||
| + | { | ||
| + | var output = ""; | ||
| + | |||
| + | for(j=0;j<sequence.length;j++) | ||
| + | { | ||
| + | if(sequence.charAt(j) == "G") | ||
| + | output = "C" + output; | ||
| + | |||
| + | if(sequence.charAt(j) == "C") | ||
| + | output = "G" + output; | ||
| + | |||
| + | if(sequence.charAt(j) == "T") | ||
| + | output = "A" + output; | ||
| + | |||
| + | if(sequence.charAt(j) == "A") | ||
| + | output = "T" + output; | ||
| + | |||
| + | if(sequence.charAt(j) == "N") | ||
| + | output = "N" + output; | ||
| + | } | ||
| + | |||
| + | return output; | ||
| + | |||
| + | } | ||
| + | |||
// findCustom function | // findCustom function | ||
| Line 83: | Line 111: | ||
//get zinc finger arrays for searching | //get zinc finger arrays for searching | ||
var bottomzf = $("#bottom").val().toUpperCase(); | var bottomzf = $("#bottom").val().toUpperCase(); | ||
| - | var topzf = $("# | + | var topzf = $("#topsearch").val().toUpperCase(); |
| + | |||
| + | //transform bottom zf to reverse complement | ||
| + | bottomzf = reverseComplement(bottomzf); | ||
| + | |||
alert(bottomzf); | alert(bottomzf); | ||
| Line 154: | Line 186: | ||
<option value="\w\w\w">NNN</option> | <option value="\w\w\w">NNN</option> | ||
</select><br /> | </select><br /> | ||
| - | <input type="text" id=" | + | <input type="text" id="topsearch" value="Input NTPs here" class="graytext" /> |
</td> | </td> | ||
<td width="20%"> | <td width="20%"> | ||
Revision as of 19:53, 8 July 2011
