Team:Grinnell/Attributions

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<h1>Attributions</h1>
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<h2>References</h2>
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<li><a name="Awram"></a><b>Awram, P., and J. Smit.</b> 1998. The <i>Caulobacter crescentus</i> paracrystalline S-layer protein is secreted by an ABC transporter (type I) secretion apparatus. J. of Bacteriol. <b>180</b>(12):3062-69.<!--10-12% of total protein synthesis--></li>
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<li><a name="Bingle"></a><b>Bingle, W.H., J.F. Nomellini, and J. Smit.</b> 2000. Secretion of the <i>Caulobacter crescentus</i> S-layer protein: further localization of the C-terminal secretion signal and its use for secretion of recombinant proteins. J. of Bacteriol. <b>182</b>(11):3298-301.</li>
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==References==
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<li><a name="Davis"></a><b>Davies, D. G., Parsek, M. R., Pearson, J. P., Iglewski, B. H., Costerton, J. W., & Greenberg, E. P.</b> 1998. The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science. <b>280</b>(11):295-298.</li>
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===<html><a name="dspB"></a></html>DspB References===
 
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1) '''Sim&otilde;es, M., L. Sim&otilde;es, and M.J. Vieira.''' 2010. A review of current and emergent biofilm control strategies. Food Sci. and Tech. '''43''':573-583.
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<li><a name="Foley & Gilbert"></a><b>Foley & Gilbert </b> 1996. Antibiotic resistance of biofilms. Biofouling. <b>10</b>(16):331-346.</li>
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2) '''Manuel, S.G.A., C. Ragunath, H. Sait, E. Izano, J. Kaplan, and N. Ramasubbu.''' 2007. Role of active-site residues of dispersin B, a biofilm-releasing β-hexosaminidase from a periodontal pathogen, in substrate hydrolysis. FEBS J. '''274''':5987-5999.  
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<li><a name="Gilchrist et al."></a><b>Gilchrist, A., JA Fisher, and J. Smit </b> 1992. Nucleotide
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sequence analysis of the gene encoding the Caulobacter crescentus paracrystalline surface
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layer protein.CJ Microbiol. <b>38</b>(16):193-202.</li>
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3) '''Kaplan, J., C. Ragunath, N. Ramasubbu, and D. Fine.''' 2003. Detachment of ''Actinobacillus actinomycetemcomitans'' Biofilm Cells by an Endogenous beta-Hexosaminidase Activity. J. of Bacteriol. '''185'''(16):4693-4698.
 
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4) '''Lu, T., and J. Collins.''' 2007. Dispersing biofilms with engineered enzymatic bacteriophage. PNAS '''104'''(27):11197-11202.
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<li><a name="Kaplan"></a><b>Kaplan, J., C. Ragunath, N. Ramasubbu, and D. Fine.</b> 2003. Detachment of <i>Actinobacillus actinomycetemcomitans</i> Biofilm Cells by an Endogenous beta-Hexosaminidase Activity. J. of Bacteriol. <b>185</b>(16):4693-4698.</li>
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<li><a name="Laub"></a><b>Laub, M., L. Shapiro, and H. McAdams.</b> 2007. Systems Biology of <i>Caulobacter</i> Annu. Rev. Genet. <b>41</b>:429-441.</li>
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<li><a name="Lu"></a><b>Lu, T., and J. Collins.</b> 2007. Dispersing biofilms with engineered enzymatic bacteriophage. PNAS <b>104</b>(27):11197-11202.</li>
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5) '''Nomellini, J., C. Li, D. Lavallee, I. Shanina, L. Cavacini, M. Horwitz, and J. Smit.''' 2010. Development of an HIV-1 Specific Microbicide Using ''Caulobacter crescentus'' S-Layer Mediated Display of CD4 and MIP1&alpha;. PLoS ONE '''5'''(4):e10366.
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<li><a name="Malakooti"></a><b>Malakooti, J., S. Wang, and B. Ely.</b> 1995. A Consensus Promoter Sequence for <i>Caulobacter crescentus</i> Genes Involved in Biosynthetic and Housekeeping Functions. J. of Bacteriol. <b>177</b>(15):4372-4376.</li>
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<li><a name="Manuel"></a><b>Manuel, S.G.A., C. Ragunath, H. Sait, E. Izano, J. Kaplan, and N. Ramasubbu.</b> 2007. Role of active-site residues of dispersin B, a biofilm-releasing β-hexosaminidase from a periodontal pathogen, in substrate hydrolysis. FEBS J. <b>274</b>:5987-5999.</li>
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6) '''Bingle, W.H., J.F. Nomellini, and J. Smit.''' 2000. Secretion of the ''Caulobacter crescentus'' S-layer protein: further localization of the C-terminal secretion signal and its use for secretion of recombinant proteins. J. of Bacteriol. '''182'''(11):3298-301.
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<li><a name="Mesenzahl"></a><b>Meisenzahl, A., L. Shapiro, U. Jenal.</b> 1997. Isolation and Characterization of a Xylose-Dependent Promoter from <i>Caulobacter crescentus</i>. J. of Bacteriol. <b>179</b>(3):592-600.</li>
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<li><a name="Mittelman"></a><b>Mittelman, M. W.</b> 1998. Structure and functional characteristics of bacterial biofilms in fluid processing operations. J. of Dairy Science. <b>81</b>:2760-2764.</li>
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===<html><a name="promotor"></a></html>Promotor References===
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                        <li><a name="Moon et al."></a><b>Moon et al.</b> 2001. Isolation and Characterization of a Highly Specific Serine Endopeptidase from an Oral Strain of  <i>Staphylococcus epidermidis</i>. Biological Chemistry. <b>382</b>(7):1095-1099.</li>
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1)   '''Malakooti, J., S. Wang, and B. Ely.''' 1995. A Consensus Promoter Sequence for ''Caulobacter crescentus'' Genes Involved in Biosynthetic and Housekeeping Functions. J. of Bacteriol. '''177'''(15):4372-4376.  
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<li><a name="Nomellini"></a><b>Nomellini, J., C. Li, D. Lavallee, I. Shanina, L. Cavacini, M. Horwitz, and J. Smit.</b> 2010. Development of an HIV-1 Specific Microbicide Using <i>Caulobacter crescentus</i> S-Layer Mediated Display of CD4 and MIP1&alpha;. PLoS ONE <b>5</b>(4):e10366.</li>
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<li><a name="Nomellinii"></a><b>Nomellini, J., M. Toporowski and J. Smit.</b> 2004. Secretion or Presentation of Recombinant Proteins and Peptides Mediated by the S-layer of <i>Caulobacter crescentus</i>. in <b>Protein Expression Technologies: Current Status and Future Trends</b> F. Baneyx Edit. 477-524.</li>
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<li><a name="Ryn"></a><b>Ryan, K.R., Taylor, J.A, and Bowers, L.M.</b> 2009. The Bam complex subunit BamE (SmpA) is required for membrane integrity, stalk growth and normal levels of outer membrane β-barrel proteins in <i>Caulobacter crescentus</i> Microbiology. <b>156</b>:742-756.</li>
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2)  '''Meisenzahl, A., L. Shapiro, U. Jenal.''' 1997. Isolation and Characterization of a Xylose-Dependent Promoter from ''Caulobacter crescentus''. J. of Bacteriol. '''179'''(3):592-600.
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<li><a name="Simoes1"></a><b>Sim&otilde;es and M.J. Vieira.</b> 2009. Persister cells in Pseudomonas fluorescens biofilms treated with a biocide. In Proceedings of the international conference processes in biofilms: Fundamentals to applications 58–62, Davis, CA.</li>
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===<html><a name="esp"></a></html>Esp References===
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===<html><a name="rsaA"></a></html>RsaA References===
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<p>1) <a name="r1"></a><b>Awram, P., and J. Smit.</b> 1998. The <i>Caulobacter crescentus</i> paracrystalline S-layer protein is secreted by an ABC transporter (type I) secretion apparatus. J. of Bacteriol. <b>180</b>(12):3062-69.<!--10-12% of total protein synthesis--></p>
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<p>2) <a name="r2"></a><b>Bingle, W.H., J.F. Nomellini, and J. Smit.</b> 2000. Secretion of the <i>Caulobacter crescentus</i> S-layer protein: further localization of the C-terminal secretion signal and its use for secretion of recombinant proteins. J. of Bacteriol. <b>182</b>(11):3298-301.<!--C-term secretion tag, N-term attach tag--></p>
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<li><a name="Simoes"></a><b>Sim&otilde;es, M., L. Sim&otilde;es, and M.J. Vieira.</b> 2010. A review of current and emergent biofilm control strategies. Food Sci. and Tech. <b>43</b>:573-583.</li>
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<li><a name="Toh"></a><b>Toh et al.</b> 2008. Characterization of the Caulobacter crescentus Holdfast Polysaccharide Biosynthesis Pathway Reveals Significant Redundancy in the
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Initiating Glycosyltransferase and Polymerase Steps. J. of Bacteriology <b>190</b>(21):7219–7231.</li>
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<h2>Attributions and Contributions</h2>
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<p>We would like to thank the <a href="https://2010.igem.org/Team:British_Columbia">University of British Columbia</a> for providing a copy of the wild type <i>dspB</i> gene.  We would also like to thank Dr. Lisa Bowers for her enduring support, guidance, and teaching us our way around the lab.  Also thank you to Carolyn Bosse, Kathy Miller, and the <a href="http://www.grinnell.edu/academic/biology">Grinnell College Biology Department</a> for providing us with access to instruments and materials for our project.  We thank <a href="http://www.idtdna.com/Home/Home.aspx">Integrated DNA Technologies (IDT)</a> for generously supporting us with oligos and for synthesizing our two genes, <i>esp</i> and <i>dspB</i>, with codons optimized for expression in <i>Caulobacter</i>.
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==Attributions & Contributions==
 
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Each team must clearly attribute work done by the team on this page.  They must distinguish work done by the team from work done by others, including the host labs, advisors, instructors, graduate students, and postgraduate masters students.
 

Latest revision as of 04:38, 29 September 2011

Grinnell Menubar

References

Attributions

References

  • Awram, P., and J. Smit. 1998. The Caulobacter crescentus paracrystalline S-layer protein is secreted by an ABC transporter (type I) secretion apparatus. J. of Bacteriol. 180(12):3062-69.
  • Bingle, W.H., J.F. Nomellini, and J. Smit. 2000. Secretion of the Caulobacter crescentus S-layer protein: further localization of the C-terminal secretion signal and its use for secretion of recombinant proteins. J. of Bacteriol. 182(11):3298-301.
  • Davies, D. G., Parsek, M. R., Pearson, J. P., Iglewski, B. H., Costerton, J. W., & Greenberg, E. P. 1998. The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science. 280(11):295-298.
  • Foley & Gilbert 1996. Antibiotic resistance of biofilms. Biofouling. 10(16):331-346.
  • Gilchrist, A., JA Fisher, and J. Smit 1992. Nucleotide sequence analysis of the gene encoding the Caulobacter crescentus paracrystalline surface layer protein.CJ Microbiol. 38(16):193-202.
  • Kaplan, J., C. Ragunath, N. Ramasubbu, and D. Fine. 2003. Detachment of Actinobacillus actinomycetemcomitans Biofilm Cells by an Endogenous beta-Hexosaminidase Activity. J. of Bacteriol. 185(16):4693-4698.
  • Laub, M., L. Shapiro, and H. McAdams. 2007. Systems Biology of Caulobacter Annu. Rev. Genet. 41:429-441.
  • Lu, T., and J. Collins. 2007. Dispersing biofilms with engineered enzymatic bacteriophage. PNAS 104(27):11197-11202.
  • Malakooti, J., S. Wang, and B. Ely. 1995. A Consensus Promoter Sequence for Caulobacter crescentus Genes Involved in Biosynthetic and Housekeeping Functions. J. of Bacteriol. 177(15):4372-4376.
  • Manuel, S.G.A., C. Ragunath, H. Sait, E. Izano, J. Kaplan, and N. Ramasubbu. 2007. Role of active-site residues of dispersin B, a biofilm-releasing β-hexosaminidase from a periodontal pathogen, in substrate hydrolysis. FEBS J. 274:5987-5999.
  • Meisenzahl, A., L. Shapiro, U. Jenal. 1997. Isolation and Characterization of a Xylose-Dependent Promoter from Caulobacter crescentus. J. of Bacteriol. 179(3):592-600.
  • Mittelman, M. W. 1998. Structure and functional characteristics of bacterial biofilms in fluid processing operations. J. of Dairy Science. 81:2760-2764.
  • Moon et al. 2001. Isolation and Characterization of a Highly Specific Serine Endopeptidase from an Oral Strain of Staphylococcus epidermidis. Biological Chemistry. 382(7):1095-1099.
  • Nomellini, J., C. Li, D. Lavallee, I. Shanina, L. Cavacini, M. Horwitz, and J. Smit. 2010. Development of an HIV-1 Specific Microbicide Using Caulobacter crescentus S-Layer Mediated Display of CD4 and MIP1α. PLoS ONE 5(4):e10366.
  • Nomellini, J., M. Toporowski and J. Smit. 2004. Secretion or Presentation of Recombinant Proteins and Peptides Mediated by the S-layer of Caulobacter crescentus. in Protein Expression Technologies: Current Status and Future Trends F. Baneyx Edit. 477-524.
  • Ryan, K.R., Taylor, J.A, and Bowers, L.M. 2009. The Bam complex subunit BamE (SmpA) is required for membrane integrity, stalk growth and normal levels of outer membrane β-barrel proteins in Caulobacter crescentus Microbiology. 156:742-756.
  • Simões and M.J. Vieira. 2009. Persister cells in Pseudomonas fluorescens biofilms treated with a biocide. In Proceedings of the international conference processes in biofilms: Fundamentals to applications 58–62, Davis, CA.
  • Simões, M., L. Simões, and M.J. Vieira. 2010. A review of current and emergent biofilm control strategies. Food Sci. and Tech. 43:573-583.
  • Toh et al. 2008. Characterization of the Caulobacter crescentus Holdfast Polysaccharide Biosynthesis Pathway Reveals Significant Redundancy in the Initiating Glycosyltransferase and Polymerase Steps. J. of Bacteriology 190(21):7219–7231.

Attributions and Contributions

We would like to thank the University of British Columbia for providing a copy of the wild type dspB gene. We would also like to thank Dr. Lisa Bowers for her enduring support, guidance, and teaching us our way around the lab. Also thank you to Carolyn Bosse, Kathy Miller, and the Grinnell College Biology Department for providing us with access to instruments and materials for our project. We thank Integrated DNA Technologies (IDT) for generously supporting us with oligos and for synthesizing our two genes, esp and dspB, with codons optimized for expression in Caulobacter.

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