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Team:Edinburgh/Links
From 2011.igem.org
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* [http://www.ebi.ac.uk/ EMBL] | * [http://www.ebi.ac.uk/ EMBL] | ||
* [http://www.ncbi.nlm.nih.gov/sites/gquery Entrez] | * [http://www.ncbi.nlm.nih.gov/sites/gquery Entrez] | ||
| + | * [http://genepool.bio.ed.ac.uk/sanger/Sanger_troubleshooting_guide_v1.pdf GenePool: Sanger Sequencing Troubleshooting] | ||
* [http://tools.neb.com/NEBcutter2/index.php NEBcutter] (finds restriction sites; also finds ORFs if they start with M) | * [http://tools.neb.com/NEBcutter2/index.php NEBcutter] (finds restriction sites; also finds ORFs if they start with M) | ||
* [http://www.ebi.ac.uk/Tools/psa/ Needle] (and other pairwise alignment tools) | * [http://www.ebi.ac.uk/Tools/psa/ Needle] (and other pairwise alignment tools) | ||
* [http://www.bioinformatics.org/sms/rev_comp.html Reverse Complement] | * [http://www.bioinformatics.org/sms/rev_comp.html Reverse Complement] | ||
| - | |||
* [http://www.cbs.dtu.dk/services/SignalP/ SignalP] | * [http://www.cbs.dtu.dk/services/SignalP/ SignalP] | ||
* [http://www.straininfo.net/ StrainInfo] | * [http://www.straininfo.net/ StrainInfo] | ||
Latest revision as of 20:20, 12 January 2012
Links
Useful information/tools, many of which we used regularly, can be found on the following pages:
Contents |
Biology methods
- Open Wetware: French Lab protocols
- J5: overview of automated DNA assembly
- Primer Design (for forensics, but probably good advice for us too)
Genomics
- BLAST: Basic Local Alignment Search Tool
- Codon Table
- EMBL
- Entrez
- GenePool: Sanger Sequencing Troubleshooting
- NEBcutter (finds restriction sites; also finds ORFs if they start with M)
- Needle (and other pairwise alignment tools)
- Reverse Complement
- SignalP
- StrainInfo
- Transeq (nucleotide to protein conceptual translation)
- UniProt
iGEM
- iGEM
- Parts Registry
- Life Reinvented (article on the origins of iGEM)
Software
Misc
- The old Wiki (do not use)
- CSS guide
