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Team:Dundee/dnaapp
From 2011.igem.org
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<script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.4.2/jquery.min.js"></script> | <script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.4.2/jquery.min.js"></script> | ||
<script type="text/javascript" src="https://2011.igem.org/Team:Dundee/cleanPage.js?action=raw&ctype=text/js"></script> | <script type="text/javascript" src="https://2011.igem.org/Team:Dundee/cleanPage.js?action=raw&ctype=text/js"></script> | ||
| - | <script type="text/javascript" src="https://2011.igem.org/Team:Dundee/ | + | <script type="text/javascript" src="https://2011.igem.org/Team:Dundee/dnaApp.js?action=raw&ctype=text/js"></script> |
| + | <script type="text/javascript" src="https://2011.igem.org/Team:Dundee/dnaVis.js?action=raw&ctype=text/js"></script> | ||
| + | <script type="text/javascript" src="https://2011.igem.org/Team:Dundee/backTranslate.js?action=raw&ctype=text/js"></script> | ||
| + | <script type="text/javascript" src="https://2011.igem.org/Team:Dundee/proteins.js?action=raw&ctype=text/js"></script> | ||
</head> | </head> | ||
<body> | <body> | ||
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<div id="menu"> | <div id="menu"> | ||
<ul> | <ul> | ||
| - | + | <li ><a href="/Team:Dundee/Project" title="Project">Project</a></li> | |
| - | + | <li><a href="/Team:Dundee/Team" title="Team">Team</a></li> | |
| - | + | <li ><a href="/Team:Dundee/Modelling" title="Modelling">Modelling</a></li> | |
| - | <li><a href="/Team:Dundee/ | + | <li ><a href="/Team:Dundee/Notebook" title="Notebook">Notebook</a></li> |
| - | <li><a href="/Team:Dundee/ | + | <li ><a href="/Team:Dundee/Results" title="Data">Data</a></li> |
<li ><a href="/Team:Dundee/Safety" title="Safety">Safety</a></li> | <li ><a href="/Team:Dundee/Safety" title="Safety">Safety</a></li> | ||
| - | <li class="current_page_item"><a href="/Team:Dundee/ | + | <li ><a href="/Team:Dundee/Sponsors" title="Sponsors">Sponsors</a></li> |
| + | <li class="current_page_item"><a href="/Team:Dundee/dnaapp" title="DNA App">DNA App</a></li> | ||
| + | <li ><a href="/Team:Dundee/Software" title="Software">Software</a></li> | ||
| + | <li ><a href="/Team:Dundee/HumanPractices" title="Human Practices">Human Practices</a></li> | ||
| + | |||
</ul> | </ul> | ||
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<div id="container"> | <div id="container"> | ||
<div id="content"> | <div id="content"> | ||
| - | <div id=" | + | <div id="dnaAppContainer"> |
| + | <div id="dnaMenu"> | ||
<button type="button" class="currentTab" onclick="showTab(this, 'dnaFunctions')">DNA -> Amino Acids</button> | <button type="button" class="currentTab" onclick="showTab(this, 'dnaFunctions')">DNA -> Amino Acids</button> | ||
<button type="button" onclick="showTab(this, 'dnaToProtein')">DNA -> Protein</button> | <button type="button" onclick="showTab(this, 'dnaToProtein')">DNA -> Protein</button> | ||
| Line 62: | Line 70: | ||
</div> | </div> | ||
<div> | <div> | ||
| - | <textarea id="pasteArea" rows="5" onkeyup="pasteDNA()"></textarea> | + | <textarea id="pasteArea" rows="5" onkeyup="pasteDNA()" onchange="pasteDNA()"></textarea> |
</div> | </div> | ||
<div id="functions"> | <div id="functions"> | ||
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</div> | </div> | ||
<div id="reverseComp"> | <div id="reverseComp"> | ||
| - | <h1 onclick="mapToAminoAcids('reverseComp')">Reverse | + | <h1 onclick="mapToAminoAcids('reverseComp')">Reverse Complement:</h1> |
<p id="reverseComp-p"></p> | <p id="reverseComp-p"></p> | ||
</div> | </div> | ||
| Line 101: | Line 109: | ||
</div> | </div> | ||
<div id="dnaToProtein" class="tabDiv"> | <div id="dnaToProtein" class="tabDiv"> | ||
| + | <p>This tool will identify the genes within a sequence of DNA and translate each into an amino acid chain.</p> | ||
<label>Enter your DNA sequence:</label><br /> | <label>Enter your DNA sequence:</label><br /> | ||
<textarea rows="5" id="sequence"></textarea> | <textarea rows="5" id="sequence"></textarea> | ||
| Line 108: | Line 117: | ||
</div> | </div> | ||
<div id="aminoToCodon" class="tabDiv"> | <div id="aminoToCodon" class="tabDiv"> | ||
| + | <label>Enter the first two letters of an amino acid:</label> | ||
<input id="aminoAcidInput" type="text" onkeyup="showAminoAcid(this.value)" /> | <input id="aminoAcidInput" type="text" onkeyup="showAminoAcid(this.value)" /> | ||
<table id="dnaCodonTable"> | <table id="dnaCodonTable"> | ||
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</div> | </div> | ||
<div id="backTranslate" class="tabDiv"> | <div id="backTranslate" class="tabDiv"> | ||
| + | <label>Escherichia coli K12</label><br /> | ||
<label>Enter your protein chain:</label><br /> | <label>Enter your protein chain:</label><br /> | ||
<textarea rows="5" id="proteinChain" onkeyup="backTranslate(this.value)"></textarea> | <textarea rows="5" id="proteinChain" onkeyup="backTranslate(this.value)"></textarea> | ||
| Line 297: | Line 308: | ||
<div id="backTranslateResults"></div> | <div id="backTranslateResults"></div> | ||
</div> | </div> | ||
| + | </div> | ||
| Line 326: | Line 338: | ||
<img src="https://static.igem.org/mediawiki/2011/b/bd/Twitterblog.png" alt = "twitter bird" /> | <img src="https://static.igem.org/mediawiki/2011/b/bd/Twitterblog.png" alt = "twitter bird" /> | ||
<div id="lasttweet"></div> | <div id="lasttweet"></div> | ||
| - | < | + | <div id="footer"> |
| - | <div class = "text2"> | + | <div class = "text2"> |
| - | + | <h2><span><a href="http://www.facebook.com/pages/Dundee-iGem-Team-2011/165447726856145">Find us on Facebook</a></span></h2> | |
| - | + | </div> | |
| - | + | <div class = "text3"> | |
<h2><span><a href="http://twitter.com/#!/DundeeiGEMTeam">Follow us on Twitter</a></span></h2> | <h2><span><a href="http://twitter.com/#!/DundeeiGEMTeam">Follow us on Twitter</a></span></h2> | ||
| - | + | </div> | |
| - | + | ||
| - | + | ||
</div> | </div> | ||
Latest revision as of 19:32, 19 September 2011
The University of Dundee
iGem 2011
Frame -
Normal:
Reverse:
Complementary:
Reverse Complement:
| # | Codon | Amino Acid | # | Codon | Amino Acid | # | Codon | Amino Acid |
|---|
This tool will identify the genes within a sequence of DNA and translate each into an amino acid chain.
Results:
| 2nd Base | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| T | C | A | G | ||||||
| 1st Base | T | ||||||||
| TTT | (Phe/F) Phenylalanine | TCT | (Ser/S) Serine | TAT | (Tyr/Y) Tyrosine | TGT | (Cys/C) Cysteine | ||
| TTC | (Phe/F) Phenylalanine | TCC | (Ser/S) Serine | TAC | (Tyr/Y) Tyrosine | TGC | (Cys/C) Cysteine | ||
| TTA | (Leu/L) Leucine | TCA | (Ser/S) Serine | TAA | Stop (Ochre) | TGA | Stop (Opal) | ||
| TTG | (Leu/L) Leucine | TCG | (Ser/S) Serine | TAG | Stop (Amber) | TGG | (Trp/W) Tryptophan | ||
| C | CTT | (Leu/L) Leucine | CCT | (Pro/P) Proline | CAT | (His/H) Histidine | CGT | (Arg/R) Arginine | |
| CTC | (Leu/L) Leucine | CCC | (Pro/P) Proline | CAC | (His/H) Histidine | CGC | (Arg/R) Arginine | ||
| CTA | (Leu/L) Leucine | CCA | (Pro/P) Proline | CAA | (Gln/Q) Glutamine | CGA | (Arg/R) Arginine | ||
| CTG | (Leu/L) Leucine | CCG | (Pro/P) Proline | CAG | (Gln/Q) Glutamine | CGG | (Arg/R) Arginine | ||
| A | ATT | (Ile/I) Isoleucine | ACT | (Thr/T) Threonine | AAT | (Asn/N) Asparagine | AGT | (Ser/S) Serine | |
| ACT | (Ile/I) Isoleucine | ACC | (Thr/T) Threonine | AAC | (Asn/N) Asparagine | AGC | (Ser/S) Serine | ||
| ATA | (Ile/I) Isoleucine | ACA | (Thr/T) Threonine | AAA | (Lys/K) Lysine | AGA | (Arg/R) Arginine | ||
| ATG | (Met/M) Methionine | ACG | (Thr/T) Threonine | AAG | (Lys/K) Lysine | AGG | (Arg/R) Arginine | ||
| G | GTT | (Val/V) Valine | GCT | (Ala/A) Alanine | GAT | (Asp/D) Aspartic Acid | GGT | (Gly/G) Glycine | |
| GTC | (Val/V) Valine | GCC | (Ala/A) Alanine | GAC | (Asp/D) Aspartic Acid | GGC | (Gly/G) Glycine | ||
| GTA | (Val/V) Valine | GCA | (Ala/A) Alanine | GAA | (Glu/E) Glutamic Acid | GGA | (Gly/G) Glycine | ||
| GTG | (Val/V) Valine | GCG | (Ala/A) Alanine | GAG | (Glu/E) Glutamic Acid | GGG | (Gly/G) Glycine | ||
Results:
