Team:Caltech/References

From 2011.igem.org

Revision as of 23:25, 28 September 2011 by Doobop39 (Talk | contribs)


Caltech iGEM 2011



Home

Project

Data

Parts

Team

Notebook

Biosafety

Human Impact

References

Support

  • Ellis, T., Adie, T. & Baldwin, G.S. DNA assembly for synthetic biology: from parts to pathways and beyond. Integrative Biology 3, 109-118 (2011).

  • Lewis, J., Mantovani, Simone M., Fu, Y. (2010). Combinatorial Alanine Substitution Enables Rapid Optimization ofCytochrome P450BM3for Selective Hydroxylation of Large Substrates. ChemBioChem Volume 11, Issue 18, 2502–2505. http://onlinelibrary.wiley.com/doi/10.1002/cbic.201000565/abstract
    • p450 BM3 enzymes' ability to degrade organic compounds.

  • Liney, K.E., Jobling, S., Shears, J.A., Simpson, P. & Tyler, C.R. Assessing the Sensitivity of Different Life Stages for Sexual Disruption in Roach (Rutilus rutilus) Exposed to Effluents from Wastewater Treatment Works. Environ Health Perspect 113 (2005).
    • Endocrine disruptors' effects on wildlife

  • Lipke, H. & Kearns, C.W. DDT Dehydrochlorinase. Journal of Biological Chemistry 234, 2123-2128 (1959).
  • Kang J, K. F. (2002). Bisphenol A Degradation by Bacteria Isolated from River Water. Archives of Environmental Contamination and Toxicology, 265-269. http://www.springerlink.com/content/ge1mec9289r4cw3w/
    • Isolation of EDC-degrading bacteria from environmental samples.

  • Kiyohara, H., Nagao, K., Yana, K. (1982). Rapid screen for bacteria degrading water-insoluble, solid hydrocarbons on agar plates. Applied and Environmental Microbiology, 454-457. http://aem.asm.org/cgi/content/abstract/43/2/454
    • Plating water-insoluble chemicals by dissolving in ether.

  • Liney K, J. S. (2005). Assessing the Sensitivity of Different Life Stages for Sexual Disruption in Roach (Rutilus rutilus) Exposed to Effluents from Wastewater Treatment Works. Environmental Health Perspectives, 1299-1307. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1281270/
    • Effects of EDCs on fish.

  • Prapanthadara, L., Koottathep, S., Promtet, N., Hemingway, J., Ketterman, A. (1995) Purification and characterization of a major glutathione S-transferase from the mosquito Anopheles dirus (Species B). Insect Biochemistry and Molecular Biology Volume 26, Issue 3, 277-285. http://www.sciencedirect.com/science/article/pii/0965174895000909
    • DDT-degrading enzyme.

  • Prapanthadara, L.-a., H. Ranson, et al. (1998). "Cloning, expression and characterization of an insect class I glutathione S-transferase from Anopheles dirus species B." Insect Biochemistry and Molecular Biology 28(5-6): 321-329. [1]
    • Kinetics of DDT-degrading enzyme.

  • Sasaki, M., Tsuchido, T., & Matsumura, Y. (2008). Molecular cloning and characterization of cytochrome P450 and ferredoxin genes involved in bisphenol A degradation in Sphingomonas bisphenolicum strain AO1. Journal of applied microbiology, 105(4), 1158-69. doi: 10.1111/j.1365-2672.2008.03843.x. http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2672.2008.03843.x/full
    • BisdA and BisdB

  • Sasaki, M., Ayako Akahira, Ko-­‐ichi Oshiman, Tetsuaki Tsuchido, and Yoshinobu Matsumura Purification of Cytochrome P450 and Ferredoxin, Involved in Bisphenol A Degradation, from Sphingomonas sp. Strain AO1 Appl Environ Microbiol. 2005 December; 71(12): 8024–8030. doi:10.1128/AEM.71.12.8024-­‐8030.2005
    • Information on BisdA (BBa_K123000) and BisdB (BBa_K123001)

  • Sommer, M.O.A., Church, G.M. & Dantas, G. A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion. Mol Syst Biol 6 (2010).
    • Information on sequencing environmental samples

  • Um, Y., Chang, M. W., & Holoman, T. P. (2010). A simple and effective plating method to screen polycyclic aromatic hydrocarbon-degrading bacteria under various redox conditions. Applied Microbiology, 291-297. doi: 10.1007/s00253-010-2761-6. http://www.springerlink.com/content/vk5ln5p745827082/
    • Alternative method for plating water-insoluble chemicals.

  • Wise, Amber, Kacie O’Brien and Tracey Woodruff. “Are Oral Contraceptives a Significant Contributor to the Estrogenicity of Drinking Water?” Environmental Science & Technology 45.1 (2011): 51-60 http://pubs.acs.org/doi/pdf/10.1021/es1014482.
    • Background on contraceptives as endocrine disruptors


Retrieved from "http://2011.igem.org/Team:Caltech/References"