Team:BU Wellesley Software/eLabNotebook

From 2011.igem.org

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<h1>Computational Team</h1>
<h1>Computational Team</h1>
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Over the summer, we studied biologists in their lab and observed their work practices. We interviewed biologists and asked what were their challenges in the lab. We brainstormed with them what were possible solutions to their problems.  
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<h5>Motivation</h5>
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<a href="http://cs.wellesley.edu/~hcilab/iGEM_wiki/images/System/elabnotebook.png"><img style="float:right; width:280px; height:200px" src="http://cs.wellesley.edu/~hcilab/iGEM_wiki/images/System/elabnotebook.png"/></a>Largest among the challenges is the issue with contamination. Having to take gloves off to interat with a computer, to take notes, to handle certain things. Our solution was a tablet interface that replaced the traditional lab notebook and improved the use experience by allowing hands-free interaction. The tablet was designed to display biological protocols, tasks, notes, lab status, and more. The switching of applications was streamlined by allowing voice activation. We also explored the possibility of using gestures to navigate the application as well.
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In this project, we were motivated by the disconnect that we observed between biologists' planning stages and their work in the lab, and by the large amount of time the biologists spent maintaining their notebooks during lab work.  Often, when biologists planned for the future, they would create a long-term plan with multiple involved steps, each building on the last, that would lead to interesting results.  However, there was still lots of work to be done before the biologists could begin their actual work: they had to figure out what protocols were necessary for each step of their work, check that there were enough supplies in the stock room for those protocols, and schedule lab time with other students to ensure that no two people needed to use a machine at the same time.  While iGEM teams had many creative solutions to these problems, including the use of Google Docs and spreadsheets to track timing, or Doodle polls for lab scheduling, there was no simple way for them to accomplish all of these tasks simultaneously. 
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<!--Over the summer, we studied biologists in their lab and observed their work practices. We interviewed biologists and asked what were their challenges in the lab. We brainstormed with them what were possible solutions to their problems.  
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<a href="http://cs.wellesley.edu/~hcilab/iGEM_wiki/images/System/elabnotebook.png"><img style="float:right; width:280px; height:200px" src="http://cs.wellesley.edu/~hcilab/iGEM_wiki/images/System/elabnotebook.png"/></a>Largest among the challenges is the issue with contamination. Having to take gloves off to interat with a computer, to take notes, to handle certain things. Our solution was a tablet interface that replaced the traditional lab notebook and improved the use experience by allowing hands-free interaction. The tablet was designed to display biological protocols, tasks, notes, lab status, and more. The switching of applications was streamlined by allowing voice activation. We also explored the possibility of using gestures to navigate the application as well. -->
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Revision as of 00:30, 11 September 2011

BU-Wellesley iGEM Team: eLabNotebook

Computational Team

Motivation
In this project, we were motivated by the disconnect that we observed between biologists' planning stages and their work in the lab, and by the large amount of time the biologists spent maintaining their notebooks during lab work. Often, when biologists planned for the future, they would create a long-term plan with multiple involved steps, each building on the last, that would lead to interesting results. However, there was still lots of work to be done before the biologists could begin their actual work: they had to figure out what protocols were necessary for each step of their work, check that there were enough supplies in the stock room for those protocols, and schedule lab time with other students to ensure that no two people needed to use a machine at the same time. While iGEM teams had many creative solutions to these problems, including the use of Google Docs and spreadsheets to track timing, or Doodle polls for lab scheduling, there was no simple way for them to accomplish all of these tasks simultaneously.

Vestibulum gravida, turpis tempus suscipit euismod, ipsum mi tristique nibh, sed sagittis ante felis at urna. Suspendisse eu neque vitae lorem elementum elementum sit amet ac ligula. Mauris vestibulum laoreet sapien at vehicula. Donec ac sapien erat. Proin id enim sed dolor suscipit laoreet vitae sit amet ligula. Nam ultricies orci vitae mauris egestas tincidunt. Vestibulum sit amet est dolor.


Results:
Ut eu nunc eget ante egestas egestas at eu metus. Integer quam justo, vehicula non sodales id, consequat vitae eros.
Aenean egestas, ipsum sed fringilla porta, erat mi facilisis lectus, quis elementum quam felis nec elit.

Ethical User Study practices:
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Overview: eLabNotebook

Hypothesis Forming


The eLabNotebook is an electronic lab notebook that facilitates collaborative, effective, and safe assembly of biological systems. The eLabNotebook allows users to:
  • Capture multimodal data inside and outside the lab with minimal effort
  • Follow a protocol in the lab while modifying and annotating steps as needed
  • Access a wide variety of digital resources
  • Get an overview of current activity and progress
  • share physical and digital resources in real-time


The implementation of the eLabNotebook entails:
  • Developing light-weight interaction techniques for capturing information
  • Considering strategies for organizing and sharing heterogeneous information
  • Visualizing current lab activity and progress
  • Designing for multiple contexts and devices

    The eLabNotebook will be initially prototyped on the iPad platform.









    Demo Video

Wetlab

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Vestibulum gravida, turpis tempus suscipit euismod, ipsum mi tristique nibh, sed sagittis ante felis at urna. Suspendisse eu neque vitae lorem elementum elementum sit amet ac ligula. Mauris vestibulum Donec ac sapien erat. Proin id enim sed dolor suscipit laoreet vitae sit amet ligula. Nam ultricies orci vitae mauris egestas tincidunt. Vestibulum sit amet est dolor.


Results:
Ut eu nunc eget ante egestas egestas at eu metus. Integer quam justo, vehicula non sodales id, consequat vitae eros.
Aenean egestas, ipsum sed fringilla porta, erat mi facilisis lectus, quis elementum quam felis nec elit.

Safety practices:
Aliquam in felis sit amet eros pharetra volutpat.