Team:BU Wellesley Software/Safety

From 2011.igem.org

(Difference between revisions)
(→Safety)
 
(28 intermediate revisions not shown)
Line 1: Line 1:
-
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
 
-
 
<html>
<html>
-
<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
+
<head>
-
<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
+
<title>BU-Wellesley iGEM Team: Meet the Team Members</title>
-
This is a template page. READ THESE INSTRUCTIONS.
+
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
-
</div>
+
<script src="http://cdn.jquerytools.org/1.2.5/full/jquery.tools.min.js?foo"></script>
-
<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
+
<style type="text/css">
-
You are provided with this team page template with which to start the iGEM season. You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2008.igem.org/Help:Template/Examples">HERE</a>.
+
/*hide default igem banner and reformat style into blank slate*/
-
</div>
+
#globalWrapper {width: 100%;}
-
<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
+
#top-section {width: 100%; height:30px; border:none;}
-
You <strong>MUST</strong> have a team description page, a project abstract, a complete project description, a lab notebook, and a safety page.  PLEASE keep all of your pages within your teams namespace. 
+
#p-logo {display:none;}
-
</div>
+
#search-controls {display:none;}
-
</div>
+
#menubar a {color:#000000;}
-
</html>
+
#menubar a:hover{text-decoration:none; color:#52749C;}
 +
.left-menu {background-color:#FFFFFF; margin:5px 0px 0px 0px; padding:0;}
 +
.left-menu ul {background-color:#FFFFFF; margin:0; padding:0;}
 +
.right-menu ul li a {background-color:#FFFFFF;}
 +
.printfooter {display:none;}
 +
#footer-box {border:none;}
 +
#catlinks {display:none;}
 +
.firstHeading {display:none;}
 +
#content {width: 100%; border:none;}
 +
#bodyContent {border:none;}
-
<!-- *** End of the alert box *** -->
+
/*actual content styles*/
 +
body {width: 800px; margin:auto;}
 +
#bu-wellesley_wiki_content {height:auto; line-height:100%;}
 +
/*#bu-wellesley_wiki_content a {color:#69d01d;}*/
 +
#bu-wellesley_wiki_content a:hover {text-decoration:none; color:#3d3f3c;}
 +
.navbar li {color: #ffffff;}
 +
.navbar li a {color: #ffffff;}
 +
.navbar li a:hover {background:#69d01d; color: #ffffff;}
-
{|align="justify"
+
/*only use for current page content header (i.e. Team, G-nomeSurferPro, etc)*/
-
|You can write a background of your team here. Give us a background of your team, the members, etc.  Or tell us more about something of your choosing.
+
H6 {
-
|[[Image:BU_Wellesley_Software_logo.png|200px|right|frame]]
+
      font-family: Helvetica;
-
|-
+
      text-transform: uppercase;
-
|
+
      text-decoration: none;
-
''Tell us more about your project.  Give us background.  Use this is the abstract of your project.  Be descriptive but concise (1-2 paragraphs)''
+
      text-align: left;
-
|[[Image:BU_Wellesley_Software_team.png|right|frame|Your team picture]]
+
      color: #3d3f3c;
-
|-
+
      font-size: 32pt;
-
|
+
    }
-
|align="center"|[[Team:BU_Wellesley_Software | Team Example]]
+
-
|}
+
-
<!--- The Mission, Experiments --->
+
</style>
 +
<link rel="stylesheet" type="text/css" href="http://cs.wellesley.edu/~hcilab/iGEM_wiki/css/Team.css">
-
{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+
</head>
-
!align="center"|[[Team:BU_Wellesley_Software|Home]]
+
-
!align="center"|[[Team:BU_Wellesley_Software/Team|Team]]
+
-
!align="center"|[https://igem.org/Team.cgi?year=2011&team_name=BU_Wellesley_Software Official Team Profile]
+
-
!align="center"|[[Team:BU_Wellesley_Software/Project|Project]]
+
-
!align="center"|[[Team:BU_Wellesley_Software/Parts|Parts Submitted to the Registry]]
+
-
!align="center"|[[Team:BU_Wellesley_Software/Modeling|Modeling]]
+
-
!align="center"|[[Team:BU_Wellesley_Software/Notebook|Notebook]]
+
-
!align="center"|[[Team:BU_Wellesley_Software/Safety|Safety]]
+
-
!align="center"|[[Team:BU_Wellesley_Software/Attributions|Attributions]]
+
-
|}
+
 +
<body class="basiclayout">
 +
<div id="bu-wellesley_wiki_content">
-
==Safety==
+
<p  style="text-align:center;"><a href="https://2011.igem.org/Team:BU_Wellesley_Software"><img src="http://cs.wellesley.edu/~hcilab/iGEM_wiki/images/banner.png" width="800px"></a></p>
-
Safety is of the upmost importance to the Wet lab division of the BU/Wellesley iGEM team. All of the members have been trained in accordance with the Boston University Office of Research Compliance standards. The laboratory space is in full compliance with laboratory safety measures as defined for BSL1 and is kept in a clean, organized condition.
+
<ul id="nav">
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Team">Team</a></li>
 +
<li><a href="#">Project</a>
 +
<ul>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Project_Overview">Overview</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Clotho">Clotho</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/G-nomeSurferPro">G-nome Surfer Pro</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/OptimusPrimer">Optimus Primer</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Trumpet">Trumpet</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Puppetshow">Puppetshow</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/eLabNotebook">eLabNotebook</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Wet_Lab">Wet Lab</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Downloads_and_Tutorials">Downloads and Tutorials</a></li>
 +
</ul>
 +
</li>
 +
<li><a href="#">Process</a>
 +
<ul>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Methodology">Methodology</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Safety">Safety</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Notebook">Notebook</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Outreach">Outreach</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Tips">Tips and Tricks</a></li>
 +
</ul>
 +
</li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Gold">Medal Fulfillment</a></li>
 +
<li><a href="#">Additional Info</a>
 +
<ul>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Acknowledgement">Acknowledgement</a></li>
 +
<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Social">Fun</a></li>
 +
</ul>
 +
</li>
 +
</ul>
-
Furthermore, in our research exploration of transcription factor-DNA interactions in ''Mycobacterium tuberculosis'', we strive to conduct experiments and construct DNA plasmids in the most biologically safe methods possible.  Our studies use the genomic DNA from ''M. tuberculosis'' as well as the genomic DNA of the nonpathogenic strain of ''Mycobacterium'' called ''Mycobacterium smegmatis''.  Working only with the DNA and ''E. coli'' bacterium in our research, instead of the ''M. tuberculosis'' organism, allows us greater flexibility to use and study the genome in a risk-free and biologically safe manner.  Additionally, the Biobrick parts we intend to construct using these transcription factor genes and promoters will be biologically safe and present no risk of harm to the environment and overall public health.  Their only use will be for the study of interactions of these transcriptional factors. 
+
<br>
 +
<h6>Safety</h6>
-
In conclusion, the BU/Wellesley wet lab division will be documenting all of our safety procedures and guidelines in our online notebooks for future iGEM teams to see. Our hope is that future iGEM projects can continue to maintain, and even excel, biosafety standards to ensure the unintentional exposure or release of pathogens or toxins into the environment.
+
<div id="tracking_nav">
 +
JUMP TO...<br>
 +
<a href="#bu-wellesley_wiki_content">Top</a><br>
 +
<a href="#comp">Computational Team</a><br>
 +
<a href="#wetlab">Wet Lab Team</a>
 +
</div>
 +
 
 +
<div id="comp" class="team_box">
 +
<h1>Computational Team Safety</h1>
 +
<p>
 +
For the computational team, safety was still an important component, as we tested our software on human subjects. We considered a user's physical, emotional, and mental demand during a study. We had consent forms for every participant in every study, letting them know that the studies were voluntary and that they could leave at any time they felt uncomfortable. We were very reassuring throughout every study, letting users know that any crashes or difficulties were our fault as designers and programmers; not theirs. We also compensated our participants with lunch or gift cards.
 +
</p>
 +
</div>
 +
 
 +
<div id="wetlab" class="team_box">
 +
<h1>Wet Lab Safety</h1>
 +
<p>
 +
Safety is of the utmost importance to the wet lab division of the BU/Wellesley iGEM team.  In our research exploration of transcription factor interactions in ''Mycobacterium tuberculosis'', we strive to conduct experiments and construct DNA plasmids using the most biologically safe methods possible.
 +
<br><br>
 +
 
 +
None of the materials used in our iGEM project pose a significant risk to the health and safety of our team members and laboratory.  We work in a standard BSL1 certified lab space and mainly work with ''E. coli'' bacteria.  Furthermore, there is no risk to the public health or environment if the materials of our project were released.  This is because the genes that we are using and studying code for transcriptional proteins and are not pathogenic or toxic.  There is no threat of security through misuse of our materials because of their nonlethal nature. 
 +
<br><br>
 +
 
 +
Specifically, despite the design of our parts and devices focus on ''M.tuberculosis'' transcription factors, the actual genes we are implementing in our BioBrick devices are genes from the nonpathogenic strain of ''M.tuberculosis'', ''Mycobacterium smegmatis''.  The genes are made from a PCR reaction using primers designed from the ''M. smegmatis'' genome.  Additionally, we are inserting these genes into ''E. coli'' bacteria, thus we are never in contact or work directly with ''M. tuberculosis'' or ''M. smegmatis''. This eliminates any risks associated with our Biobrick devices affecting our team members as well as the overall public health and environment.  The genes we are using are available to the <a href="http://www.tbdb.org/"> public</a>, thus there is no threat to security with our parts. 
 +
<br><br>
 +
 
 +
In terms of lab safety and institutional standards, there is an <a href="http://www.bu.edu/orccommittees/ibc/">Institutional Biosafety Committee</a> (IBC) at Boston University which evaluates all research projects, primarily those involved with recombinant DNA, and insures proper biosafety guidelines.  We are in contact with the IBC and are in the process of approving our project. 
 +
<br><br>
 +
 
 +
There is also a <a href="http://www.bu.edu/orccommittees/laboratory-safety/">Laboratory Safety Committee</a> through which all
 +
wet lab members have taken a mandatory laboratory safety training.  This training provides a basic overview to chemical and biosafety, fire and life safety, emergency management, and waste management.  In the United States, the major centers for biosafety procedures and guidelines are the National Institutes of Health (NIH) <a href="http://oba.od.nih.gov/rdna/nih_guidelines_oba.html">Guidelines</a> and the <a href="http://www.cdc.gov/">Center for Disease Control and Prevention</a> (CDC).
 +
<br><br>
 +
 
 +
The BU/Wellesley wet lab division will be documenting all of our safety procedures and guidelines in our online notebooks for future iGEM teams to see. Our hope is that future iGEM projects can continue to maintain, and even excel, biosafety standards to ensure the unintentional exposure or release of pathogens or toxins into the environment.
 +
</p>
 +
</div>
 +
 +
 +
 +
 
 +
</div>
 +
</body>
 +
</html>

Latest revision as of 21:02, 21 September 2011

BU-Wellesley iGEM Team: Meet the Team Members


Safety

Computational Team Safety

For the computational team, safety was still an important component, as we tested our software on human subjects. We considered a user's physical, emotional, and mental demand during a study. We had consent forms for every participant in every study, letting them know that the studies were voluntary and that they could leave at any time they felt uncomfortable. We were very reassuring throughout every study, letting users know that any crashes or difficulties were our fault as designers and programmers; not theirs. We also compensated our participants with lunch or gift cards.

Wet Lab Safety

Safety is of the utmost importance to the wet lab division of the BU/Wellesley iGEM team. In our research exploration of transcription factor interactions in ''Mycobacterium tuberculosis'', we strive to conduct experiments and construct DNA plasmids using the most biologically safe methods possible.

None of the materials used in our iGEM project pose a significant risk to the health and safety of our team members and laboratory. We work in a standard BSL1 certified lab space and mainly work with ''E. coli'' bacteria. Furthermore, there is no risk to the public health or environment if the materials of our project were released. This is because the genes that we are using and studying code for transcriptional proteins and are not pathogenic or toxic. There is no threat of security through misuse of our materials because of their nonlethal nature.

Specifically, despite the design of our parts and devices focus on ''M.tuberculosis'' transcription factors, the actual genes we are implementing in our BioBrick devices are genes from the nonpathogenic strain of ''M.tuberculosis'', ''Mycobacterium smegmatis''. The genes are made from a PCR reaction using primers designed from the ''M. smegmatis'' genome. Additionally, we are inserting these genes into ''E. coli'' bacteria, thus we are never in contact or work directly with ''M. tuberculosis'' or ''M. smegmatis''. This eliminates any risks associated with our Biobrick devices affecting our team members as well as the overall public health and environment. The genes we are using are available to the public, thus there is no threat to security with our parts.

In terms of lab safety and institutional standards, there is an Institutional Biosafety Committee (IBC) at Boston University which evaluates all research projects, primarily those involved with recombinant DNA, and insures proper biosafety guidelines. We are in contact with the IBC and are in the process of approving our project.

There is also a Laboratory Safety Committee through which all wet lab members have taken a mandatory laboratory safety training. This training provides a basic overview to chemical and biosafety, fire and life safety, emergency management, and waste management. In the United States, the major centers for biosafety procedures and guidelines are the National Institutes of Health (NIH) Guidelines and the Center for Disease Control and Prevention (CDC).

The BU/Wellesley wet lab division will be documenting all of our safety procedures and guidelines in our online notebooks for future iGEM teams to see. Our hope is that future iGEM projects can continue to maintain, and even excel, biosafety standards to ensure the unintentional exposure or release of pathogens or toxins into the environment.

Retrieved from "http://2011.igem.org/Team:BU_Wellesley_Software/Safety"