Team:BU Wellesley Software/Project Overview

From 2011.igem.org

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<a href="https://2011.igem.org/Team:BU_Wellesley_Software/Clotho">Clotho</a></li> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/G-nomeSurferPro">G-nome Surfer Pro</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/OptimusPrimer">Optimus Primer</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Trumpet">Trumpet</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Puppetshow">Puppetshow</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/eLabNotebook">eLabNotebook</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Wet_Lab">Wet Lab</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Downloads_and_Tutorials">Downloads and Tutorials</a>
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<a href="https://2011.igem.org/Team:BU_Wellesley_Software/Clotho">Clotho</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/G-nomeSurferPro">G-nome Surfer Pro</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/OptimusPrimer">Optimus Primer</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Trumpet">Trumpet</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Puppetshow">Puppetshow</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/eLabNotebook">eLabNotebook</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Wet_Lab">Wet Lab</a> | <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Downloads_and_Tutorials">Downloads and Tutorials</a>
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<div class="project_abstract">
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We present tools which facilitate the research, design, and fabrication of biological constructs. Our workflow comprises Gnome Surfer for research, Trumpet and Optimus Primer for design, and Puppeteer and E-Notebook for the construction of those designs. Gnome surfer promotes collaborative
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We present tools which facilitate the research, design, and fabrication of biological constructs. Our workflow comprises <a href="https://2011.igem.org/Team:BU_Wellesley_Software/G-nomeSurferPro">G-nome Surfer Pro</a> for research, <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Trumpet">Trumpet</a> and <a href="https://2011.igem.org/Team:BU_Wellesley_Software/OptimusPrimer">Optimus Primer</a> for design, and <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Puppetshow">Puppetshow</a> and <a href="https://2011.igem.org/Team:BU_Wellesley_Software/eLabNotebook">eLabNotebook</a> for the construction of those designs. <a href="https://2011.igem.org/Team:BU_Wellesley_Software/G-nomeSurferPro">G-nome Surfer Pro</a> promotes collaborative
research by allowing users to browse genes, Parts, and other DNA along with their associated
research by allowing users to browse genes, Parts, and other DNA along with their associated
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literature on a table-top surface. Using Optimus Primer, primers can be designed for the selected
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literature on a table-top surface. Using <a href="https://2011.igem.org/Team:BU_Wellesley_Software/OptimusPrimer">Optimus Primer</a>, primers can be designed for the selected
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Parts. Trumpet generates permutable constructs from these Parts by interleaving invertase sites
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Parts. <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Trumpet">Trumpet</a> generates permutable constructs from these Parts by interleaving invertase sites
among them. To assemble these permutable constructs, we present a Protocol Automation Stack
among them. To assemble these permutable constructs, we present a Protocol Automation Stack
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comprising a high-level programming language called Puppeteer, executable on a robot. For improving
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comprising a high-level programming language called <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Puppetshow">Puppetshow</a>, executable on a robot. For improving
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manual protocol execution, we are developing an Electronic Lab Notebook that helps capture data, and  
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manual protocol execution, we are developing an <a href="https://2011.igem.org/Team:BU_Wellesley_Software/eLabNotebook">eLabNotebook</a> that helps capture data, and  
schedule resources and lab activities. Our unique tools offer an end-to-end workflow that is
schedule resources and lab activities. Our unique tools offer an end-to-end workflow that is
collaborative, includes wetlab automation and organization, and provides algorithms for designing
collaborative, includes wetlab automation and organization, and provides algorithms for designing

Revision as of 15:30, 28 September 2011

BU-Wellesley iGEM Team: Meet the Team Members