Team:BU Wellesley Software/Notebook/JanooNotebook
From 2011.igem.org
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==To-Do List== | ==To-Do List== | ||
- | *<del>read through Doug's Algorithm paper</del>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860133/] | + | *<del>read through Doug's Algorithm paper</del> [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860133/] |
*<del>read through AssemblyManager code</del> | *<del>read through AssemblyManager code</del> | ||
- | *<del>read through ClothoHelp</del>[http://wiki.bu.edu/ece-clotho/index.php/Main_Page] | + | *<del>read through ClothoHelp</del> [http://wiki.bu.edu/ece-clotho/index.php/Main_Page] |
**<del>edit main page to allow for click-able images</del> | **<del>edit main page to allow for click-able images</del> | ||
**<del>break main page</del> | **<del>break main page</del> |
Revision as of 19:14, 6 June 2011
Life = 42
To-Do List
read through Doug's Algorithm paper[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860133/]read through AssemblyManager coderead through ClothoHelp[http://wiki.bu.edu/ece-clotho/index.php/Main_Page]edit main page to allow for click-able imagesbreak main pagefix link-caption centering issue
read through kirigami/TB paper- read through Friedland abstract/paper
- PuppetShow Thought Project
- read through Puppeteer/PuppetShow powerpoint
- read through Puppeteer/related abstract
- peruse GroovyScripter code/structure
- figure out how to seamlessly integrate Python script-compiling within fluid GUI
- design aforementioned fluid GUI
The Backburner
- Protocol Graphs Thought Project
- Ideally, we should have a protocol graph that would be a generic form of managing an arbitrary combination of protocols.
- The protocol graph should contain vertices, which are either operands or protocols/operations.
- The graph should also connect operands to protocols.
- Given access to a library of protocol specifications, one should be able to give an expression or an explicit protocol graph for parsing purposes.
- One should be able to use PuppetShow (see powerpoint) to create an implicit protocol graph.
- One should be able to reconfigure protocol graphs for optimization, etc.
- Questions
- How do we want to construct this graph?
- Does the user input an expression?
- Should we have an interactive GUI to help user create custom protocol graphs?