Team:Paris Bettencourt/Modeling/Assisted diffusion/Pressure differential

From 2011.igem.org

Team IGEM Paris 2011


Back to the classical physics

To deduce the force exercising on the tube from membranian pressure, please refer to an explanation figure below :

The force calculation
Tension-force_explanation / The force applied to the nanotube as a function of the surface tension force.
Geometry / The system geometry.


Here T is a surface tension, N is a resulting force of the area of the tube attachment to the bacterium, Δα or α is the half of the angle with a vertex in the center of the bacterium and between the tube extremities. Only this zone is giving a non-compensated contribution to the resulting force.

So the force exercising on the tube is given by the formula :


The force exercising on the tube

where r is the tube radius, R is the bacterium radius.

At first approximation we can consider the process a serie of quasi equilibrium states, that it is rather slow that acceleration of the membrane is zero. We find the speed of the tube membrane at every moment of time out of the second Newton's law :


Speed of the tube

where ΔF is the difference of the forces applied to the extremities of the tube.


The number of phospholipids in two bacteria will change according to these equations :

Number of phospholipids in the first bacterium


Number of phospholipids in the second bacterium

where N1, N2 are numbers of phospholipids on the membrane of the first and the second bacterium corrispondingly, ΔS is the surface per one phospholipid one the tube.

Cutting the whole period of time of our process into laps of time dt we should solve the Poiseuille equation each time reevoluating the difference of pressure :

Pressure difference on the extremities of the nanotube

The Poiseuille equation :

Speed of the cytoplasm inside the nanotube

where L is the total length of the nanotube, r is the distance from the center line of the nanotube, R is the radius of the nanotube.

The volume flow of the liquid passed through the nanotube is :

The volume flow of the liquid through the nanotube

By integrating the last formula in time we will get the mass of the liquid passed from one bacterium to another :

Mass of the liquid passed through the nanotube

where T is the time of the process.